Arl11 (ADP ribosylation factor like GTPase 11)

Gene: Arl11 (ADP ribosylation factor like GTPase 11) Heterocephalus glaber

Analyze

Symbol:

Arl11

Name:

ADP ribosylation factor like GTPase 11

RGD ID:

18922701

Description:

INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ADP-ribosylation factor-like protein 11

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624748	5,023,391 - 5,025,131 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624748	5,023,391 - 5,025,389 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 13q14 deletion syndrome (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Ovarian Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

hematopoietic progenitor cell differentiation (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Arl11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624748	5,023,391 - 5,025,131 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624748	5,023,391 - 5,025,389 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

ARL11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	49,628,507 - 49,633,872 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	49,628,507 - 49,633,872 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	50,202,643 - 50,208,008 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	49,100,625 - 49,105,732 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	49,100,435 - 49,106,009	NCBI
Celera	13	31,257,372 - 31,262,945 (+)	NCBI		Celera
Cytogenetic Map	13	q14.2	NCBI
HuRef	13	30,995,906 - 31,001,479 (+)	NCBI		HuRef
CHM1_1	13	50,169,956 - 50,175,529 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	48,847,427 - 48,852,792 (+)	NCBI		T2T-CHM13v2.0

Arl11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	61,543,740 - 61,549,386 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	61,547,202 - 61,549,385 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	61,306,290 - 61,311,937 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	61,309,753 - 61,311,936 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	61,928,590 - 61,930,773 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	60,263,863 - 60,266,046 (+)	NCBI		MGSCv36	mm8
Celera	14	59,078,077 - 59,080,081 (+)	NCBI		Celera
Cytogenetic Map	14	D1	NCBI
cM Map	14	32.66	NCBI

Arl11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	39,659,404 - 39,661,651 (+)	NCBI		GRCr8
mRatBN7.2	15	35,483,330 - 35,485,579 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	35,480,018 - 35,496,596 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	37,348,246 - 37,350,384 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	38,498,890 - 38,501,028 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	36,944,125 - 36,946,271 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	41,639,985 - 41,645,685 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	41,643,541 - 41,645,685 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	45,448,923 - 45,451,069 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	40,458,780 - 40,460,926 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	40,474,479 - 40,476,626 (+)	NCBI
Celera	15	35,180,893 - 35,182,952 (+)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

Arl11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	3,086,983 - 3,090,423 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	3,086,983 - 3,090,423 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARL11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	51,067,071 - 51,071,028 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	49,718,749 - 49,722,670 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	30,767,431 - 30,770,962 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	49,516,084 - 49,519,462 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	49,518,030 - 49,518,620 (+)	Ensembl	panpan1.1		panPan2

Arl11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	159,201,892 - 159,204,115 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936565	2,686,783 - 2,687,377 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARL11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	18,095,974 - 18,099,819 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	18,097,723 - 18,100,425 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	18,412,359 - 18,414,343 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARL11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	27,544,990 - 27,550,306 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	27,547,359 - 27,547,949 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	16,333,716 - 16,338,843 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_004844154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01027495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSHGLT00000009481 ⟹ ENSHGLP00000009377

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624748	5,023,391 - 5,025,131 (-)	Ensembl

RefSeq Acc Id:

XM_004844154 ⟹ XP_004844211

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624748	5,023,391 - 5,025,389 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_004844211	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000009377

RefSeq Acc Id:

XP_004844211 ⟸ XM_004844154

RefSeq Acc Id:

ENSHGLP00000009377 ⟸ ENSHGLT00000009481

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000006725	Ensembl, ENTREZGENE
Ensembl Transcript	ENSHGLT00000009481	ENTREZGENE
NCBI Gene	Arl11	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD