Rab8a (RAB8A, member RAS oncogene family) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rab8a (RAB8A, member RAS oncogene family) Heterocephalus glaber
Analyze
Symbol: Rab8a
Name: RAB8A, member RAS oncogene family
RGD ID: 18922599
Description: ENCODES a protein that exhibits GDP binding (ortholog); myosin V binding (ortholog); protein kinase binding (ortholog); INVOLVED IN axonogenesis (ortholog); cellular response to insulin stimulus (ortholog); Golgi organization (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH genetic disease (ortholog); rheumatoid arthritis (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); ciliary base (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ras-related protein Rab-8A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,116,610 - 1,132,111 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,119,356 - 1,132,029 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rab8a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,116,610 - 1,132,111 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,119,356 - 1,132,029 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RAB8A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381916,111,889 - 16,134,234 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1916,111,889 - 16,134,234 (+)EnsemblGRCh38hg38GRCh38
GRCh371916,222,699 - 16,245,044 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361916,083,490 - 16,105,445 (+)NCBINCBI36Build 36hg18NCBI36
Build 341916,083,489 - 16,105,443NCBI
Celera1916,124,417 - 16,146,398 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1915,793,443 - 15,815,391 (+)NCBIHuRef
CHM1_11916,221,978 - 16,243,940 (+)NCBICHM1_1
T2T-CHM13v2.01916,245,960 - 16,268,300 (+)NCBIT2T-CHM13v2.0
Rab8a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,915,044 - 72,935,210 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl872,915,044 - 72,937,748 (+)EnsemblGRCm39 Ensembl
GRCm38872,161,200 - 72,181,366 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,161,200 - 72,183,904 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,685,099 - 74,705,265 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36875,090,189 - 75,110,355 (+)NCBIMGSCv36mm8
Celera876,516,674 - 76,537,034 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.84NCBI
Rab8a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81617,688,049 - 17,709,412 (-)NCBIGRCr8
mRatBN7.21617,654,027 - 17,675,385 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,654,034 - 17,675,678 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,713,745 - 17,734,289 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,845,873 - 18,866,846 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,766,676 - 17,787,222 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,355,047 - 19,376,776 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,355,048 - 19,376,776 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,213,378 - 19,235,107 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,078,519 - 18,099,882 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11618,079,199 - 18,089,589 (-)NCBI
Celera1617,868,660 - 17,890,021 (-)NCBICelera
Cytogenetic Map16p14NCBI
Rab8a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555241,403,811 - 1,416,005 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555241,403,811 - 1,416,005 (-)NCBIChiLan1.0ChiLan1.0
RAB8A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22020,979,867 - 21,002,037 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11919,985,674 - 20,007,842 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01915,598,029 - 15,619,988 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11916,580,720 - 16,602,189 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1916,580,720 - 16,602,189 (+)Ensemblpanpan1.1panPan2
RAB8A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,334,601 - 46,351,907 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,334,601 - 46,351,907 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2046,249,113 - 46,266,419 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02046,823,033 - 46,840,339 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2046,821,781 - 46,864,926 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12046,057,667 - 46,074,969 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,469,207 - 46,486,513 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02046,745,524 - 46,762,829 (-)NCBIUU_Cfam_GSD_1.0
Rab8a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,836,649 - 204,854,271 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365964,385,772 - 4,403,441 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365964,385,788 - 4,403,393 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB8A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl261,429,523 - 61,450,413 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1261,430,680 - 61,450,351 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2261,176,944 - 61,196,619 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB8A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1614,611,938 - 14,634,086 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl614,611,868 - 14,634,487 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660744,859,385 - 4,881,900 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000005773   ⟹   ENSHGLP00000005701
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249081,116,610 - 1,132,111 (-)Ensembl
RefSeq Acc Id: XM_004873305   ⟹   XP_004873362
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249081,119,356 - 1,132,029 (-)NCBI
RefSeq Acc Id: XM_013068699   ⟹   XP_012924153
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249081,119,356 - 1,132,029 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004873362 (Get FASTA)   NCBI Sequence Viewer  
  XP_012924153 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB15864 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005701
GenBank Protein JAO01812 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012924153   ⟸   XM_013068699
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004873362   ⟸   XM_004873305
- Peptide Label: isoform X1
- UniProtKB: G5C2V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000005701   ⟸   ENSHGLT00000005773


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004165 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005773 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report hgl:101709178 UniProtKB/TrEMBL
NCBI Gene Rab8a ENTREZGENE
PANTHER LD44762P UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-8A UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt G5C2V3 ENTREZGENE, UniProtKB/TrEMBL