Znf879 (zinc finger protein 879) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Znf879 (zinc finger protein 879) Heterocephalus glaber
Analyze
Symbol: Znf879
Name: zinc finger protein 879
RGD ID: 18922533
Description: ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis-1 (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473342,014,657 - 42,026,102 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf879
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473342,014,657 - 42,026,102 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZNF879
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385179,023,804 - 179,035,064 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5179,023,804 - 179,035,064 (+)EnsemblGRCh38hg38GRCh38
GRCh375178,450,805 - 178,462,065 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365178,383,069 - 178,394,671 (+)NCBINCBI36Build 36hg18NCBI36
Celera5174,078,027 - 174,088,704 (+)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5173,177,961 - 173,188,909 (+)NCBIHuRef
CHM1_15177,883,985 - 177,894,596 (+)NCBICHM1_1
T2T-CHM13v2.05179,576,953 - 179,588,262 (+)NCBIT2T-CHM13v2.0
Zfp879
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391150,719,821 - 50,732,414 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1150,722,858 - 50,732,379 (-)EnsemblGRCm39 Ensembl
GRCm381150,828,994 - 50,841,587 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,832,031 - 50,841,552 (-)EnsemblGRCm38mm10GRCm38
MGSCv371150,645,537 - 50,655,054 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361150,675,458 - 50,684,975 (-)NCBIMGSCv36mm8
Celera1155,394,144 - 55,403,662 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1130.93NCBI
Zfp879
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81035,649,693 - 35,659,692 (-)NCBIGRCr8
mRatBN7.21035,148,679 - 35,158,674 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1035,148,679 - 35,158,674 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1039,831,210 - 39,841,220 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01039,322,262 - 39,331,533 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01034,824,878 - 34,834,901 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01036,326,633 - 36,336,628 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1036,326,633 - 36,336,628 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01036,097,634 - 36,107,629 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41036,402,500 - 36,412,495 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1034,507,898 - 34,517,893 (-)NCBICelera
Cytogenetic Map10q22NCBI
Znf879
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554081,376,117 - 1,405,204 (-)NCBIChiLan1.0ChiLan1.0
ZNF879
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24173,967,477 - 173,978,173 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15172,107,011 - 172,117,713 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05174,184,543 - 174,195,297 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15181,475,475 - 181,486,734 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5181,474,353 - 181,486,734 (+)Ensemblpanpan1.1panPan2
ZNF879
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1112,516,118 - 2,551,379 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl112,519,462 - 2,554,329 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha112,640,079 - 2,678,471 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0112,492,236 - 2,530,649 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl112,495,586 - 2,530,471 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1112,463,579 - 2,501,959 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0112,541,991 - 2,580,387 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0112,782,821 - 2,821,226 (-)NCBIUU_Cfam_GSD_1.0
ZNF879
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12380,779,700 - 80,790,970 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607512,135,175 - 12,146,055 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021242184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01009006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021242184   ⟹   XP_021097843
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473342,014,657 - 42,026,102 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021097843 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021097843   ⟸   XM_021242184


Additional Information

Database Acc Id Source(s)
NCBI Gene Znf879 ENTREZGENE