Psma5 (proteasome 20S subunit alpha 5) - Rat Genome Database

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Gene: Psma5 (proteasome 20S subunit alpha 5) Heterocephalus glaber
Analyze
Symbol: Psma5
Name: proteasome 20S subunit alpha 5
RGD ID: 18922499
Description: INVOLVED IN proteasomal protein catabolic process (inferred); proteasome-mediated ubiquitin-dependent protein catabolic process (inferred); proteolysis involved in protein catabolic process (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 63 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proteasome subunit alpha 5; Proteasome subunit alpha type-5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247725,122,928 - 5,148,911 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247725,127,271 - 5,148,928 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Psma5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247725,122,928 - 5,148,911 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247725,127,271 - 5,148,928 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PSMA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381109,399,042 - 109,426,448 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1109,399,042 - 109,426,448 (-)EnsemblGRCh38hg38GRCh38
GRCh371109,941,664 - 109,969,070 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,745,995 - 109,770,560 (-)NCBINCBI36Build 36hg18NCBI36
Build 341109,656,514 - 109,681,079NCBI
Celera1108,213,830 - 108,238,396 (-)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,834,893 - 107,862,352 (-)NCBIHuRef
CHM1_11110,056,490 - 110,083,948 (-)NCBICHM1_1
T2T-CHM13v2.01109,431,823 - 109,459,233 (-)NCBIT2T-CHM13v2.0
Psma5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,164,242 - 108,187,268 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,164,242 - 108,187,290 (+)EnsemblGRCm39 Ensembl
GRCm383108,256,926 - 108,279,952 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,256,926 - 108,279,974 (+)EnsemblGRCm38mm10GRCm38
MGSCv373108,059,844 - 108,082,870 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363108,385,267 - 108,408,029 (+)NCBIMGSCv36mm8
Celera3110,590,430 - 110,613,444 (+)NCBICelera
Cytogenetic Map3F3NCBI
cM Map346.89NCBI
Psma5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82198,584,502 - 198,607,867 (+)NCBIGRCr8
mRatBN7.22195,896,369 - 195,919,733 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2195,896,365 - 195,919,731 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2203,539,210 - 203,562,914 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02201,421,318 - 201,445,023 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02196,238,271 - 196,261,980 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02211,050,344 - 211,073,706 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,050,360 - 211,073,714 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02230,519,722 - 230,543,040 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42203,825,060 - 203,848,378 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12203,787,813 - 203,811,132 (+)NCBI
Celera2188,541,236 - 188,564,598 (+)NCBICelera
Cytogenetic Map2q34NCBI
Psma5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,822,707 - 12,846,296 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,823,137 - 12,845,631 (-)NCBIChiLan1.0ChiLan1.0
LOC100972383
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21117,878,199 - 117,902,808 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11117,038,139 - 117,062,730 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,776,428 - 111,803,827 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11111,013,553 - 111,031,944 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1111,015,365 - 111,031,944 (-)Ensemblpanpan1.1panPan2
PSMA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1642,425,590 - 42,450,074 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl642,425,624 - 42,449,925 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha645,200,468 - 45,224,273 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0642,756,247 - 42,780,052 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl642,756,272 - 42,780,048 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1642,489,005 - 42,513,283 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0642,446,865 - 42,470,654 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0642,881,892 - 42,905,703 (+)NCBIUU_Cfam_GSD_1.0
Psma5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,185,778 - 19,208,874 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936704905,248 - 929,215 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936704905,277 - 928,364 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4110,662,692 - 110,717,290 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14110,695,429 - 110,717,308 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,153,782 - 121,168,609 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.24121,219,893 - 121,225,930 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap4q15-q16NCBI
PSMA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12024,120,613 - 24,146,369 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2024,120,562 - 24,148,736 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603834,313,802 - 34,339,484 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000020331   ⟹   ENSHGLP00000020130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247725,122,928 - 5,148,911 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000020332   ⟹   ENSHGLP00000020131
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247725,127,435 - 5,145,451 (-)Ensembl
RefSeq Acc Id: XM_004853629   ⟹   XP_004853686
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247725,127,271 - 5,148,926 (-)NCBI
RefSeq Acc Id: XM_021265611   ⟹   XP_021121270
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247725,127,271 - 5,148,928 (-)NCBI
RefSeq Acc Id: XM_021265612   ⟹   XP_021121271
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247725,127,271 - 5,148,892 (-)NCBI
RefSeq Acc Id: XM_021265613   ⟹   XP_021121272
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247725,127,271 - 5,148,892 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004853686 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121270 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121271 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121272 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB11675 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020130
  ENSHGLP00000020131
  ENSHGLP00100014869
GenBank Protein JAO03411 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021121270   ⟸   XM_021265611
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004853686   ⟸   XM_004853629
- Peptide Label: isoform X1
- UniProtKB: G5BQW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121272   ⟸   XM_021265613
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021121271   ⟸   XM_021265612
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000020131   ⟸   ENSHGLT00000020332
RefSeq Acc Id: ENSHGLP00000020130   ⟸   ENSHGLT00000020331


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014410 Ensembl, ENTREZGENE
  ENSHGLG00000044451 UniProtKB/TrEMBL
  ENSHGLG00100038636 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000020331 ENTREZGENE
  ENSHGLT00000020332 UniProtKB/TrEMBL
  ENSHGLT00100015032 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/TrEMBL
  Proteasome_alpha-type UniProtKB/TrEMBL
  Proteasome_alpha_type_5 UniProtKB/TrEMBL
  Proteasome_asu_N UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/TrEMBL
KEGG Report hgl:101699124 UniProtKB/TrEMBL
NCBI Gene Psma5 ENTREZGENE
PANTHER PROTEASOME SUBUNIT ALPHA TYPE-5 UniProtKB/TrEMBL
  PROTEASOME SUBUNIT ALPHA/BETA UniProtKB/TrEMBL
Pfam Proteasome UniProtKB/TrEMBL
  Proteasome_A_N UniProtKB/TrEMBL
PROSITE PROTEASOME_ALPHA_1 UniProtKB/TrEMBL
  PROTEASOME_ALPHA_2 UniProtKB/TrEMBL
SMART Proteasome_A_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/TrEMBL
UniProt G5BQW4 ENTREZGENE, UniProtKB/TrEMBL