Acss2 (acyl-CoA synthetase short chain family member 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Acss2 (acyl-CoA synthetase short chain family member 2) Heterocephalus glaber
Analyze
Symbol: Acss2
Name: acyl-CoA synthetase short chain family member 2
RGD ID: 18922498
Description: ENCODES a protein that exhibits acetate-CoA ligase activity (ortholog); chromatin binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN acetate biosynthetic process (ortholog); acetyl-CoA biosynthetic process (ortholog); lipid biosynthetic process (ortholog); PARTICIPATES IN disulfiram pharmacodynamics pathway; fatty acid beta degradation pathway; Leigh disease pathway; ASSOCIATED WITH Experimental Melanoma (ortholog); genetic disease (ortholog); Inflammation (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acetyl-coenzyme A synthetase, cytoplasmic
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248424,471,360 - 4,522,849 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248424,470,551 - 4,523,174 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
membrane  (IEA)
nucleus  (ISO)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Acss2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248424,471,360 - 4,522,849 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248424,470,551 - 4,523,174 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ACSS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382034,874,989 - 34,927,959 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2034,872,146 - 34,927,962 (+)EnsemblGRCh38hg38GRCh38
GRCh372033,462,792 - 33,515,762 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362032,926,406 - 32,979,423 (+)NCBINCBI36Build 36hg18NCBI36
Build 342032,926,501 - 32,979,423NCBI
Celera2030,211,860 - 30,264,862 (+)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2030,241,182 - 30,294,089 (+)NCBIHuRef
CHM1_12033,364,136 - 33,416,989 (+)NCBICHM1_1
T2T-CHM13v2.02036,595,583 - 36,648,613 (+)NCBIT2T-CHM13v2.0
Acss2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,359,963 - 155,404,663 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,359,868 - 155,427,644 (+)EnsemblGRCm39 Ensembl
GRCm382155,518,043 - 155,562,743 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,517,948 - 155,585,724 (+)EnsemblGRCm38mm10GRCm38
MGSCv372155,343,779 - 155,388,479 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,209,484 - 155,254,184 (+)NCBIMGSCv36mm8
Celera2161,450,232 - 161,494,992 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.26NCBI
Acss2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,464,124 - 164,507,607 (+)NCBIGRCr8
mRatBN7.23144,003,808 - 144,047,452 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,004,336 - 144,059,675 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3147,870,984 - 147,913,977 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,488,259 - 156,531,254 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,227,791 - 154,270,788 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,032,925 - 151,075,856 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,032,952 - 151,075,856 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,400,353 - 157,443,341 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43146,013,995 - 146,057,119 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13145,919,548 - 145,962,044 (+)NCBI
Celera3142,729,140 - 142,772,009 (+)NCBICelera
Cytogenetic Map3q42NCBI
Acss2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542226,451,598 - 26,500,546 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542226,450,899 - 26,500,336 (-)NCBIChiLan1.0ChiLan1.0
ACSS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22140,609,437 - 40,660,734 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12040,602,540 - 40,653,837 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,205,104 - 31,256,263 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,329,706 - 32,381,274 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,329,721 - 32,380,526 (+)Ensemblpanpan1.1panPan2
ACSS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12423,928,800 - 23,973,383 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2423,928,838 - 23,972,651 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2423,575,057 - 23,619,550 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,620,738 - 24,665,236 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,620,678 - 24,668,479 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12423,908,064 - 23,952,517 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,003,357 - 24,047,830 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02424,442,065 - 24,486,750 (+)NCBIUU_Cfam_GSD_1.0
Acss2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640172,906,912 - 172,955,145 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,795,077 - 5,842,676 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,794,685 - 5,842,619 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACSS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,260,147 - 38,315,757 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,260,152 - 38,315,764 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21743,455,051 - 43,510,660 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACSS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1239,181,446 - 39,230,164 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl239,181,468 - 39,229,444 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605087,582,705 - 87,633,586 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000018958   ⟹   ENSHGLP00000018771
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248424,471,360 - 4,522,849 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000018959   ⟹   ENSHGLP00000018772
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248424,471,360 - 4,522,849 (-)Ensembl
RefSeq Acc Id: XM_004867890   ⟹   XP_004867947
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248424,470,551 - 4,522,953 (-)NCBI
RefSeq Acc Id: XM_013066701   ⟹   XP_012922155
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248424,470,551 - 4,522,954 (-)NCBI
RefSeq Acc Id: XM_013066703   ⟹   XP_012922157
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248424,470,551 - 4,523,174 (-)NCBI
RefSeq Acc Id: XM_021246915   ⟹   XP_021102574
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248424,470,551 - 4,522,568 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004867947 (Get FASTA)   NCBI Sequence Viewer  
  XP_012922155 (Get FASTA)   NCBI Sequence Viewer  
  XP_012922157 (Get FASTA)   NCBI Sequence Viewer  
  XP_021102574 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018772
RefSeq Acc Id: XP_012922157   ⟸   XM_013066703
- Peptide Label: isoform X3
- UniProtKB: G5C6I6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012922155   ⟸   XM_013066701
- Peptide Label: isoform X2
- UniProtKB: G5C6I6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004867947   ⟸   XM_004867890
- Peptide Label: isoform X1
- UniProtKB: G5C6I6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102574   ⟸   XM_021246915
- Peptide Label: isoform X3
- UniProtKB: G5C6I6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000018771   ⟸   ENSHGLT00000018958
RefSeq Acc Id: ENSHGLP00000018772   ⟸   ENSHGLT00000018959


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013444 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000018959 ENTREZGENE
Gene3D-CATH 3.30.300.30 UniProtKB/TrEMBL
  N-terminal domain of ligase-like UniProtKB/TrEMBL
InterPro ACAS_N UniProtKB/TrEMBL
  AMP-bd_C UniProtKB/TrEMBL
  AMP-bd_C_sf UniProtKB/TrEMBL
  AMP-binding_CS UniProtKB/TrEMBL
  AMP-dep_Synth/Lig_com UniProtKB/TrEMBL
  ANL_N_sf UniProtKB/TrEMBL
NCBI Gene Acss2 ENTREZGENE
PANTHER ACETYL-COENZYME A SYNTHETASE UniProtKB/TrEMBL
  ACETYL-COENZYME A SYNTHETASE, CYTOPLASMIC UniProtKB/TrEMBL
Pfam ACAS_N UniProtKB/TrEMBL
  AMP-binding UniProtKB/TrEMBL
  AMP-binding_C UniProtKB/TrEMBL
PROSITE AMP_BINDING UniProtKB/TrEMBL
Superfamily-SCOP Acetyl-CoA synthetase-like UniProtKB/TrEMBL
UniProt G5C6I6 ENTREZGENE, UniProtKB/TrEMBL