Hoxd8 (homeobox D8) - Rat Genome Database

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Gene: Hoxd8 (homeobox D8) Heterocephalus glaber
Analyze
Symbol: Hoxd8
Name: homeobox D8
RGD ID: 18922466
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); split hand-foot malformation 5 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein Hox-D8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478713,270,860 - 13,273,749 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478713,270,798 - 13,273,294 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hoxd8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478713,270,860 - 13,273,749 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478713,270,798 - 13,273,294 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HOXD8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382176,129,705 - 176,132,695 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2176,129,694 - 176,132,695 (+)EnsemblGRCh38hg38GRCh38
GRCh372176,994,433 - 176,997,423 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362176,702,723 - 176,704,974 (+)NCBINCBI36Build 36hg18NCBI36
Build 342176,819,983 - 176,822,235NCBI
Celera2170,603,640 - 170,605,908 (+)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2168,871,358 - 168,874,275 (+)NCBIHuRef
CHM1_12177,000,289 - 177,003,290 (+)NCBICHM1_1
T2T-CHM13v2.02176,617,853 - 176,620,845 (+)NCBIT2T-CHM13v2.0
Hoxd8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39274,534,973 - 74,538,277 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl274,534,959 - 74,538,277 (+)EnsemblGRCm39 Ensembl
GRCm38274,704,615 - 74,707,933 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl274,704,615 - 74,707,933 (+)EnsemblGRCm38mm10GRCm38
MGSCv37274,543,546 - 74,545,364 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36274,506,387 - 74,508,772 (+)NCBIMGSCv36mm8
Celera276,375,612 - 76,377,430 (+)NCBICelera
Cytogenetic Map2C3NCBI
cM Map244.13NCBI
Hoxd8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8380,015,223 - 80,017,789 (+)NCBIGRCr8
mRatBN7.2359,607,793 - 59,610,359 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl359,607,996 - 59,610,361 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx362,995,063 - 62,997,627 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0371,578,708 - 71,581,272 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0369,343,776 - 69,346,340 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0361,627,329 - 61,629,743 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl361,627,383 - 61,628,628 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0368,090,779 - 68,095,201 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera359,127,113 - 59,131,905 (+)NCBICelera
Cytogenetic Map3q23NCBI
Hoxd8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540320,530,536 - 20,532,580 (-)NCBIChiLan1.0ChiLan1.0
HOXD8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21378,797,111 - 78,800,219 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B78,810,072 - 78,815,621 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B63,409,223 - 63,412,146 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B181,118,425 - 181,121,281 (+)NCBIpanpan1.1PanPan1.1panPan2
HOXD8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13619,938,916 - 19,941,092 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3619,948,251 - 19,950,742 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03620,079,483 - 20,081,976 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13620,153,636 - 20,156,126 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03620,154,340 - 20,156,830 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03620,266,158 - 20,268,649 (+)NCBIUU_Cfam_GSD_1.0
Hoxd8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303137,063,904 - 137,065,931 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365095,616,836 - 5,619,802 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOXD8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1581,931,010 - 81,935,529 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11581,930,923 - 81,935,528 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21591,398,122 - 91,401,425 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HOXD8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11061,704,730 - 61,707,706 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1061,705,355 - 61,706,614 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040137,902,631 - 137,907,666 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000004937   ⟹   ENSHGLP00000004873
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478713,270,860 - 13,273,749 (+)Ensembl
RefSeq Acc Id: XM_004857722   ⟹   XP_004857779
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478713,270,813 - 13,273,294 (+)NCBI
RefSeq Acc Id: XM_004857723   ⟹   XP_004857780
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478713,270,806 - 13,273,294 (+)NCBI
RefSeq Acc Id: XM_021238594   ⟹   XP_021094253
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478713,270,806 - 13,273,294 (+)NCBI
RefSeq Acc Id: XM_021238595   ⟹   XP_021094254
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478713,270,798 - 13,273,294 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004857779 (Get FASTA)   NCBI Sequence Viewer  
  XP_004857780 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094253 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094254 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004873
Reference Protein Sequences
RefSeq Acc Id: XP_021094254   ⟸   XM_021238595
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021094253   ⟸   XM_021238594
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004857780   ⟸   XM_004857723
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004857779   ⟸   XM_004857722
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000004873   ⟸   ENSHGLT00000004937


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003577 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004937 ENTREZGENE
NCBI Gene Hoxd8 ENTREZGENE