Npvf (neuropeptide VF precursor) - Rat Genome Database

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Gene: Npvf (neuropeptide VF precursor) Heterocephalus glaber
Analyze
Symbol: Npvf
Name: neuropeptide VF precursor
RGD ID: 18922442
Description: ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN neuropeptide signaling pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FMRFamide-related peptide; pro-FMRFamide-related neuropeptide VF
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247395,321,132 - 5,325,519 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247395,321,831 - 5,323,710 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Npvf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247395,321,132 - 5,325,519 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247395,321,831 - 5,323,710 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NPVF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38725,224,570 - 25,228,486 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl725,224,570 - 25,228,486 (-)EnsemblGRCh38hg38GRCh38
GRCh37725,264,189 - 25,268,105 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36725,230,714 - 25,234,630 (-)NCBINCBI36Build 36hg18NCBI36
Build 34725,037,432 - 25,041,345NCBI
Celera725,253,342 - 25,257,259 (-)NCBICelera
Cytogenetic Map7p15.3NCBI
HuRef725,150,784 - 25,154,701 (-)NCBIHuRef
CHM1_1725,266,169 - 25,270,086 (-)NCBICHM1_1
T2T-CHM13v2.0725,360,013 - 25,363,930 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2725,315,484 - 25,319,401 (-)NCBI
Npvf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39650,627,652 - 50,631,425 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl650,627,652 - 50,631,419 (-)EnsemblGRCm39 Ensembl
GRCm38650,650,672 - 50,654,445 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl650,650,672 - 50,654,439 (-)EnsemblGRCm38mm10GRCm38
MGSCv37650,600,870 - 50,604,392 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36650,580,457 - 50,583,979 (-)NCBIMGSCv36mm8
Celera651,168,462 - 51,171,984 (-)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map624.34NCBI
Npvf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8481,043,128 - 81,047,045 (-)NCBIGRCr8
mRatBN7.2479,712,358 - 79,716,275 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl479,712,520 - 79,716,236 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx484,929,993 - 84,933,709 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0480,705,514 - 80,709,230 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0479,145,852 - 79,149,568 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0480,391,785 - 80,395,476 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl480,391,785 - 80,395,502 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04145,061,114 - 145,064,805 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4478,886,521 - 78,890,237 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1479,162,650 - 79,166,367 (-)NCBI
Celera474,619,146 - 74,622,862 (-)NCBICelera
Cytogenetic Map4q24NCBI
Npvf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541027,161,730 - 27,165,341 (-)NCBIChiLan1.0ChiLan1.0
NPVF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2630,067,706 - 30,071,629 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1778,392,433 - 78,396,356 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0725,883,679 - 25,887,596 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1725,489,577 - 25,493,126 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl725,489,577 - 25,493,126 (-)Ensemblpanpan1.1panPan2
NPVF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11438,652,870 - 38,656,241 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1438,652,870 - 38,656,241 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1438,202,380 - 38,205,751 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01438,591,233 - 38,594,603 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1438,591,233 - 38,594,603 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11438,701,648 - 38,705,017 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01438,394,782 - 38,398,153 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01438,738,901 - 38,742,321 (-)NCBIUU_Cfam_GSD_1.0
Npvf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511882,895,882 - 82,899,554 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364782,107,835 - 2,111,188 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364782,107,835 - 2,111,188 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPVF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1847,082,963 - 47,087,357 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11847,082,678 - 47,087,651 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21851,890,546 - 51,895,218 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NPVF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12133,118,553 - 33,123,057 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604271,531,249 - 71,539,948 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000025463   ⟹   ENSHGLP00000025241
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247395,321,132 - 5,325,519 (+)Ensembl
RefSeq Acc Id: XM_021254043   ⟹   XP_021109702
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247395,321,831 - 5,323,710 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021109702 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB01969 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025241
  ENSHGLP00100015816
Reference Protein Sequences
RefSeq Acc Id: XP_021109702   ⟸   XM_021254043
- UniProtKB: G5AY58 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000025241   ⟸   ENSHGLT00000025463


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017985 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100011679 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000025463 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100015991 UniProtKB/TrEMBL
InterPro FMRFamide-related/fGRP UniProtKB/TrEMBL
NCBI Gene Npvf ENTREZGENE
PANTHER PRO-FMRFAMIDE-RELATED NEUROPEPTIDE VF UniProtKB/TrEMBL
  PTHR14403 UniProtKB/TrEMBL
UniProt G5AY58 ENTREZGENE, UniProtKB/TrEMBL