Klhl41 (kelch like family member 41) - Rat Genome Database

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Gene: Klhl41 (kelch like family member 41) Heterocephalus glaber
Analyze
Symbol: Klhl41
Name: kelch like family member 41
RGD ID: 18922183
Description: INVOLVED IN myofibril assembly (ortholog); protein ubiquitination (ortholog); pseudopodium assembly (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); genetic disease (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Kelch repeat and BTB domain-containing protein 10; kelch-like protein 41
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247877,065,137 - 7,077,841 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247877,065,121 - 7,077,857 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Klhl41
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247877,065,137 - 7,077,841 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247877,065,121 - 7,077,857 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KLHL41
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382169,509,702 - 169,526,258 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2169,509,702 - 169,526,258 (+)EnsemblGRCh38hg38GRCh38
GRCh372170,366,212 - 170,382,768 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362170,074,458 - 170,091,018 (+)NCBINCBI36Build 36hg18NCBI36
Build 342170,191,718 - 170,208,279NCBI
Celera2163,985,145 - 164,001,693 (+)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2162,256,791 - 162,273,335 (+)NCBIHuRef
CHM1_12170,372,126 - 170,388,680 (+)NCBICHM1_1
T2T-CHM13v2.02169,986,941 - 170,003,489 (+)NCBIT2T-CHM13v2.0
Klhl41
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39269,500,464 - 69,514,583 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl269,500,464 - 69,514,574 (+)EnsemblGRCm39 Ensembl
GRCm38269,670,120 - 69,684,239 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl269,670,120 - 69,684,230 (+)EnsemblGRCm38mm10GRCm38
MGSCv37269,508,177 - 69,522,296 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36269,470,959 - 69,485,078 (+)NCBIMGSCv36mm8
Celera271,339,447 - 71,353,726 (+)NCBICelera
Cytogenetic Map2C2NCBI
cM Map240.92NCBI
Klhl41
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8374,842,118 - 74,855,244 (+)NCBIGRCr8
mRatBN7.2354,434,291 - 54,447,415 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl354,434,234 - 54,449,222 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx357,834,266 - 57,847,390 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0366,417,864 - 66,430,988 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0364,180,224 - 64,193,348 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0355,910,177 - 55,923,303 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl355,910,177 - 55,923,303 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0362,521,998 - 62,535,124 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4351,816,016 - 51,829,140 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1351,712,387 - 51,725,512 (+)NCBI
Celera353,994,900 - 54,008,018 (+)NCBICelera
Cytogenetic Map3q21NCBI
Klhl41
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554495,023,362 - 5,061,705 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554495,023,362 - 5,041,006 (-)NCBIChiLan1.0ChiLan1.0
KLHL41
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21372,168,114 - 72,184,579 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B72,183,087 - 72,202,911 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B56,778,475 - 56,798,317 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B174,248,884 - 174,265,508 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B174,248,884 - 174,265,508 (+)Ensemblpanpan1.1panPan2
KLHL41
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13614,235,845 - 14,251,621 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3614,235,941 - 14,251,083 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3614,246,436 - 14,262,204 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03614,352,500 - 14,368,230 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3614,352,589 - 14,368,045 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13614,436,418 - 14,452,160 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03614,426,418 - 14,442,160 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03614,538,249 - 14,553,986 (+)NCBIUU_Cfam_GSD_1.0
Klhl41
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303131,493,634 - 131,508,703 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650947,463 - 66,556 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650947,298 - 62,608 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLHL41
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1575,875,859 - 75,893,799 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11575,875,694 - 75,893,789 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21584,996,215 - 85,014,712 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KLHL41
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11055,023,978 - 55,044,196 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040144,487,050 - 144,505,140 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000011073   ⟹   ENSHGLP00000010951
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247877,065,137 - 7,077,841 (+)Ensembl
RefSeq Acc Id: XM_004857627   ⟹   XP_004857684
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247877,065,121 - 7,077,857 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004857684 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB17916 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010951
Reference Protein Sequences
RefSeq Acc Id: XP_004857684   ⟸   XM_004857627
- UniProtKB: G5C8Q5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000010951   ⟸   ENSHGLT00000011073


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007856 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011073 ENTREZGENE
Gene3D-CATH 1.25.40.420 UniProtKB/TrEMBL
  Kelch-type beta propeller UniProtKB/TrEMBL
InterPro BACK UniProtKB/TrEMBL
  BTB-kelch_protein UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  KLHL41_KL41B_BTB_POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene Klhl41 ENTREZGENE
PANTHER LD33804P UniProtKB/TrEMBL
Pfam BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
PIRSF Kelch-like_protein_gigaxonin UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
SMART BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch UniProtKB/TrEMBL
Superfamily-SCOP Kelch motif UniProtKB/TrEMBL
  POZ domain UniProtKB/TrEMBL
UniProt G5C8Q5 ENTREZGENE, UniProtKB/TrEMBL