Phka1 (phosphorylase kinase regulatory subunit alpha 1) - Rat Genome Database

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Gene: Phka1 (phosphorylase kinase regulatory subunit alpha 1) Heterocephalus glaber
Analyze
Symbol: Phka1
Name: phosphorylase kinase regulatory subunit alpha 1
RGD ID: 18922172
Description: ENCODES a protein that exhibits calmodulin binding (inferred); kinase activity (inferred); INVOLVED IN protein autophosphorylation (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH autistic disorder (ortholog); Cornelia de Lange syndrome 5 (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN phosphorylase kinase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249032,857,378 - 3,068,534 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249032,859,252 - 3,068,516 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Phka1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249032,857,378 - 3,068,534 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249032,859,252 - 3,068,516 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PHKA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X72,578,814 - 72,714,306 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX72,578,814 - 72,714,319 (-)EnsemblGRCh38hg38GRCh38
GRCh37X71,798,664 - 71,934,154 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X71,717,203 - 71,850,612 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X71,583,501 - 71,716,903NCBI
CeleraX72,141,887 - 72,277,747 (-)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX65,553,170 - 65,688,660 (-)NCBIHuRef
CHM1_1X71,691,651 - 71,827,294 (-)NCBICHM1_1
T2T-CHM13v2.0X71,011,736 - 71,147,907 (-)NCBIT2T-CHM13v2.0
Phka1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X101,557,581 - 101,687,907 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX101,557,581 - 101,687,852 (-)EnsemblGRCm39 Ensembl
GRCm38X102,513,975 - 102,644,301 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX102,513,975 - 102,644,246 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X99,709,314 - 99,839,585 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X98,718,393 - 98,846,917 (-)NCBIMGSCv36mm8
CeleraX89,425,232 - 89,555,150 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX45.47NCBI
Phka1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X71,639,701 - 71,778,465 (-)NCBIGRCr8
mRatBN7.2X67,601,302 - 67,738,504 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX67,601,302 - 67,738,455 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX69,084,656 - 69,221,526 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X72,584,887 - 72,721,763 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X70,146,037 - 70,282,911 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X72,377,020 - 72,515,385 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX72,377,021 - 72,515,366 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X73,218,886 - 73,356,004 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X90,553,527 - 90,692,073 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X90,626,959 - 90,765,506 (-)NCBI
CeleraX67,954,686 - 68,091,557 (-)NCBICelera
Cytogenetic MapXq22NCBI
Phka1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547512,020,629 - 12,172,443 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547512,020,278 - 12,172,427 (-)NCBIChiLan1.0ChiLan1.0
PHKA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X72,255,291 - 72,386,081 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X72,258,746 - 72,389,672 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X61,816,613 - 61,949,179 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X71,900,762 - 72,033,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX71,900,762 - 72,033,055 (-)Ensemblpanpan1.1panPan2
PHKA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X56,579,538 - 56,758,293 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX56,581,435 - 56,757,905 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX47,405,712 - 47,585,405 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X57,633,970 - 57,778,843 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX57,633,970 - 57,778,287 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X55,549,695 - 55,732,132 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X56,945,562 - 57,125,410 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X56,794,558 - 56,974,936 (-)NCBIUU_Cfam_GSD_1.0
Phka1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X45,213,224 - 45,321,344 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367621,657,781 - 1,766,605 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367621,657,778 - 1,766,592 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHKA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX58,455,939 - 58,583,216 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X58,456,097 - 58,583,216 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X66,182,346 - 66,288,186 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHKA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X62,397,726 - 62,528,695 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX62,397,739 - 62,528,708 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660654,273,916 - 4,405,596 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004872674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004872676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013068455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021250507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021250508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021250509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021250510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01102200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01102222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01004942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH165992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000013204   ⟹   ENSHGLP00000013067
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249032,857,378 - 3,068,534 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000013205   ⟹   ENSHGLP00000013068
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249032,857,378 - 3,068,534 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000013206   ⟹   ENSHGLP00000013069
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249032,859,252 - 3,068,091 (-)Ensembl
RefSeq Acc Id: XM_004872674   ⟹   XP_004872731
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249032,859,252 - 3,068,514 (-)NCBI
RefSeq Acc Id: XM_004872676   ⟹   XP_004872733
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249032,859,252 - 3,068,515 (-)NCBI
RefSeq Acc Id: XM_013068455   ⟹   XP_012923909
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249032,859,252 - 3,068,515 (-)NCBI
RefSeq Acc Id: XM_021250507   ⟹   XP_021106166
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249032,859,252 - 3,068,514 (-)NCBI
RefSeq Acc Id: XM_021250508   ⟹   XP_021106167
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249032,859,252 - 3,068,514 (-)NCBI
RefSeq Acc Id: XM_021250509   ⟹   XP_021106168
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249032,859,252 - 3,068,515 (-)NCBI
RefSeq Acc Id: XM_021250510   ⟹   XP_021106169
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249032,859,252 - 3,068,516 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021106169   ⟸   XM_021250510
- Peptide Label: isoform X5
- UniProtKB: A0A0P6J3C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106168   ⟸   XM_021250509
- Peptide Label: isoform X4
- UniProtKB: A0A0P6J3C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004872733   ⟸   XM_004872676
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J3C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923909   ⟸   XM_013068455
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J3C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004872731   ⟸   XM_004872674
- Peptide Label: isoform X1
- UniProtKB: G5AM89 (UniProtKB/TrEMBL),   A0A0P6J3C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106167   ⟸   XM_021250508
- Peptide Label: isoform X1
- UniProtKB: G5AM89 (UniProtKB/TrEMBL),   A0A0P6J3C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106166   ⟸   XM_021250507
- Peptide Label: isoform X1
- UniProtKB: G5AM89 (UniProtKB/TrEMBL),   A0A0P6J3C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000013069   ⟸   ENSHGLT00000013206
RefSeq Acc Id: ENSHGLP00000013068   ⟸   ENSHGLT00000013205
RefSeq Acc Id: ENSHGLP00000013067   ⟸   ENSHGLT00000013204


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009342 Ensembl, ENTREZGENE
  ENSHGLG00100011406 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000013204 ENTREZGENE
  ENSHGLT00000013205 ENTREZGENE
  ENSHGLT00000013206 ENTREZGENE
  ENSHGLT00100046404 UniProtKB/TrEMBL
Gene3D-CATH 1.50.10.10 UniProtKB/TrEMBL
InterPro 6-hairpin_glycosidase_sf UniProtKB/TrEMBL
  6hp_glycosidase-like_sf UniProtKB/TrEMBL
  GH15-like UniProtKB/TrEMBL
  KPBA/B_C UniProtKB/TrEMBL
  PHK_A/B_su UniProtKB/TrEMBL
KEGG Report hgl:101699364 UniProtKB/TrEMBL
NCBI Gene Phka1 ENTREZGENE
PANTHER PHOSPHORYLASE B KINASE REGULATORY SUBUNIT ALPHA, SKELETAL MUSCLE ISOFORM UniProtKB/TrEMBL
  PTHR10749 UniProtKB/TrEMBL
Pfam Glyco_hydro_15 UniProtKB/TrEMBL
  KPBB_C UniProtKB/TrEMBL
Superfamily-SCOP SSF48208 UniProtKB/TrEMBL
UniProt A0A0P6J3C2 ENTREZGENE, UniProtKB/TrEMBL
  G5AM89 ENTREZGENE, UniProtKB/TrEMBL