Lancl3 (LanC like family member 3) - Rat Genome Database

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Gene: Lancl3 (LanC like family member 3) Heterocephalus glaber
Analyze
Symbol: Lancl3
Name: LanC like family member 3 (Ensembl:LanC like 3)
RGD ID: 18921982
Description: INVOLVED IN carbohydrate metabolic process (inferred); peptide modification (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LanC like 3; lanC-like protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476217,925,158 - 18,033,734 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476217,916,148 - 18,033,799 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Lancl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476217,925,158 - 18,033,734 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476217,916,148 - 18,033,799 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LANCL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X37,571,661 - 37,684,463 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX37,571,569 - 37,684,463 (+)EnsemblGRCh38hg38GRCh38
GRCh37X37,430,914 - 37,543,716 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X37,315,741 - 37,421,668 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X37,187,013 - 37,292,941NCBI
CeleraX41,568,483 - 41,674,412 (+)NCBICelera
Cytogenetic MapXp21.1NCBI
HuRefX35,177,392 - 35,283,210 (+)NCBIHuRef
CHM1_1X37,461,942 - 37,567,881 (+)NCBICHM1_1
T2T-CHM13v2.0X36,975,217 - 37,088,020 (+)NCBIT2T-CHM13v2.0
Lancl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X9,066,212 - 9,134,324 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX9,066,141 - 9,134,324 (+)EnsemblGRCm39 Ensembl
GRCm38X9,199,973 - 9,268,085 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX9,199,902 - 9,268,085 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X8,777,099 - 8,845,211 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X8,356,932 - 8,425,044 (+)NCBIMGSCv36mm8
CeleraX6,939,793 - 7,007,686 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX4.18NCBI
Lancl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X16,150,991 - 16,282,425 (-)NCBIGRCr8
mRatBN7.2X13,478,499 - 13,609,934 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX13,480,311 - 13,609,678 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX13,668,026 - 13,802,683 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X17,164,957 - 17,299,612 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X13,421,537 - 13,556,192 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X14,358,224 - 14,490,340 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX14,358,224 - 14,490,340 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X15,139,374 - 15,271,030 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X25,632,939 - 25,763,093 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX13,918,129 - 13,943,497 (+)NCBICelera
Cytogenetic MapXq12NCBI
Lancl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955587556,105 - 658,735 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955587556,105 - 658,735 (+)NCBIChiLan1.0ChiLan1.0
LANCL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X39,219,967 - 39,333,348 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X39,223,341 - 39,336,722 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X30,021,481 - 30,134,830 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X37,731,552 - 37,838,564 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX37,731,552 - 37,838,564 (+)Ensemblpanpan1.1panPan2
LANCL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X32,349,007 - 32,452,130 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX32,349,269 - 32,443,254 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX19,697,168 - 19,799,843 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X32,388,686 - 32,489,931 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX32,388,634 - 32,482,657 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X32,475,050 - 32,577,678 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X32,439,725 - 32,542,739 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X32,487,876 - 32,590,728 (+)NCBIUU_Cfam_GSD_1.0
Lancl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X24,578,494 - 24,681,314 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365024,419,474 - 4,520,795 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365024,419,279 - 4,522,025 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LANCL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX33,427,444 - 33,541,304 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X33,426,731 - 33,543,506 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X37,128,910 - 37,198,298 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LANCL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366605638,041,100 - 38,147,980 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026497   ⟹   ENSHGLP00000026262
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476217,925,158 - 18,033,734 (-)Ensembl
RefSeq Acc Id: XM_004850036   ⟹   XP_004850093
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476217,916,148 - 18,033,787 (-)NCBI
RefSeq Acc Id: XM_021262580   ⟹   XP_021118239
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476217,916,148 - 18,033,791 (-)NCBI
RefSeq Acc Id: XM_021262581   ⟹   XP_021118240
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476217,916,148 - 18,033,799 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004850093 (Get FASTA)   NCBI Sequence Viewer  
  XP_021118239 (Get FASTA)   NCBI Sequence Viewer  
  XP_021118240 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026262
Reference Protein Sequences
RefSeq Acc Id: XP_021118240   ⟸   XM_021262581
- Peptide Label: isoform X3
- UniProtKB: G5BMP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118239   ⟸   XM_021262580
- Peptide Label: isoform X2
- UniProtKB: G5BMP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004850093   ⟸   XM_004850036
- Peptide Label: isoform X1
- UniProtKB: G5BMP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000026262   ⟸   ENSHGLT00000026497


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018690 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026497 ENTREZGENE
Gene3D-CATH 1.50.10.10 UniProtKB/TrEMBL
InterPro 6hp_glycosidase-like_sf UniProtKB/TrEMBL
  LANC-like UniProtKB/TrEMBL
  LanC-like_prot_euk UniProtKB/TrEMBL
NCBI Gene Lancl3 ENTREZGENE
PANTHER LANC-LIKE PROTEIN UniProtKB/TrEMBL
  LANC-LIKE PROTEIN 3 UniProtKB/TrEMBL
Pfam LANC_like UniProtKB/TrEMBL
PRINTS LANCEUKARYTE UniProtKB/TrEMBL
  LANCSUPER UniProtKB/TrEMBL
SMART LANC_like UniProtKB/TrEMBL
Superfamily-SCOP LanC-like UniProtKB/TrEMBL
UniProt G5BMP7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-28 Lancl3  LanC like family member 3  Lancl3  LanC like 3  Symbol and/or name change 5135510 APPROVED