Rnf146 (ring finger protein 146) - Rat Genome Database

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Gene: Rnf146 (ring finger protein 146) Heterocephalus glaber
Analyze
Symbol: Rnf146
Name: ring finger protein 146
RGD ID: 18921760
Description: ENCODES a protein that exhibits enzyme binding (ortholog); poly-ADP-D-ribose binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Brain Hypoxia-Ischemia (ortholog); genetic disease (ortholog); osteochondrodysplasia (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase RNF146
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247531,671,614 - 1,706,793 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rnf146
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247531,671,614 - 1,706,793 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RNF146
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386127,266,682 - 127,288,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6127,266,726 - 127,288,567 (+)EnsemblGRCh38hg38GRCh38
GRCh376127,587,827 - 127,609,707 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366127,629,713 - 127,651,202 (+)NCBINCBI36Build 36hg18NCBI36
Build 346127,629,712 - 127,651,198NCBI
Celera6128,330,302 - 128,351,791 (+)NCBICelera
Cytogenetic Map6q22.33NCBI
HuRef6125,164,466 - 125,186,349 (+)NCBIHuRef
CHM1_16127,852,150 - 127,874,042 (+)NCBICHM1_1
T2T-CHM13v2.06128,455,637 - 128,477,520 (+)NCBIT2T-CHM13v2.0
Rnf146
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391029,220,172 - 29,238,438 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1029,220,172 - 29,238,438 (-)EnsemblGRCm39 Ensembl
GRCm381029,344,176 - 29,362,442 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1029,344,176 - 29,362,442 (-)EnsemblGRCm38mm10GRCm38
MGSCv371029,063,982 - 29,082,248 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361029,035,587 - 29,051,858 (-)NCBIMGSCv36mm8
Celera1030,276,585 - 30,294,697 (-)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1016.6NCBI
Rnf146
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8130,286,680 - 30,304,367 (+)NCBIGRCr8
mRatBN7.2128,458,864 - 28,475,758 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl128,458,887 - 28,475,923 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx128,260,504 - 28,271,097 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0134,260,355 - 34,270,948 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0128,461,120 - 28,471,713 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0130,856,923 - 30,873,814 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl130,863,217 - 30,873,808 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0132,290,907 - 32,307,789 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4129,255,138 - 29,265,731 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1129,258,082 - 29,268,670 (+)NCBI
Celera127,132,709 - 27,143,302 (+)NCBICelera
Cytogenetic Map1p11NCBI
Rnf146
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554368,312,096 - 8,331,648 (+)NCBIChiLan1.0ChiLan1.0
RNF146
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25147,263,264 - 147,284,796 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16145,172,033 - 145,193,592 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06125,057,312 - 125,079,096 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16129,170,440 - 129,192,602 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6129,190,562 - 129,191,733 (+)Ensemblpanpan1.1panPan2
RNF146
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1165,988,600 - 66,010,873 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl165,988,656 - 66,010,881 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha166,794,457 - 66,816,710 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0166,191,606 - 66,213,917 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl166,191,010 - 66,213,917 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1166,121,749 - 66,143,998 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0165,906,358 - 65,928,595 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0166,548,694 - 66,570,938 (+)NCBIUU_Cfam_GSD_1.0
Rnf146
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946116,001,734 - 116,023,924 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366392,393,150 - 2,417,982 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366392,394,566 - 2,417,452 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF146
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl135,909,575 - 35,926,968 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1135,909,789 - 35,927,265 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2139,594,042 - 39,612,617 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNF146
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11346,441,069 - 46,462,533 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1346,441,741 - 46,442,823 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604018,718,979 - 18,740,720 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004845952   ⟹   XP_004846009
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247531,672,520 - 1,706,793 (+)NCBI
RefSeq Acc Id: XM_004845953   ⟹   XP_004846010
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247531,672,061 - 1,706,793 (+)NCBI
RefSeq Acc Id: XM_004845954   ⟹   XP_004846011
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247531,671,618 - 1,706,793 (+)NCBI
RefSeq Acc Id: XM_021259218   ⟹   XP_021114877
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247531,671,614 - 1,706,793 (+)NCBI
RefSeq Acc Id: XM_021259219   ⟹   XP_021114878
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247531,671,658 - 1,706,793 (+)NCBI
RefSeq Acc Id: XM_021259220   ⟹   XP_021114879
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247531,672,519 - 1,706,793 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021114877   ⟸   XM_021259218
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004846011   ⟸   XM_004845954
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021114878   ⟸   XM_021259219
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004846010   ⟸   XM_004845953
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021114879   ⟸   XM_021259220
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004846009   ⟸   XM_004845952
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene Rnf146 ENTREZGENE