Lypd3 (LY6/PLAUR domain containing 3) - Rat Genome Database

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Gene: Lypd3 (LY6/PLAUR domain containing 3) Heterocephalus glaber
Analyze
Symbol: Lypd3
Name: LY6/PLAUR domain containing 3
RGD ID: 18921698
Description: ENCODES a protein that exhibits laminin binding (ortholog); INVOLVED IN cell-matrix adhesion (ortholog); ASSOCIATED WITH genetic disease (ortholog); schizophrenia (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ly6/PLAUR domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249071,022,500 - 1,028,102 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249071,024,083 - 1,028,179 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Lypd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249071,022,500 - 1,028,102 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249071,024,083 - 1,028,179 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LYPD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381943,460,787 - 43,465,608 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1943,460,787 - 43,465,608 (-)EnsemblGRCh38hg38GRCh38
GRCh371943,964,939 - 43,969,760 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361948,656,786 - 48,661,671 (-)NCBINCBI36Build 36hg18NCBI36
Build 341948,656,778 - 48,661,648NCBI
Celera1940,765,674 - 40,770,557 (-)NCBICelera
Cytogenetic Map19q13.31NCBI
HuRef1940,394,803 - 40,399,686 (-)NCBIHuRef
CHM1_11943,966,592 - 43,971,477 (-)NCBICHM1_1
T2T-CHM13v2.01946,281,130 - 46,285,954 (-)NCBIT2T-CHM13v2.0
Lypd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,335,995 - 24,340,543 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,335,975 - 24,340,543 (+)EnsemblGRCm39 Ensembl
GRCm38724,636,570 - 24,641,118 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl724,636,550 - 24,641,118 (+)EnsemblGRCm38mm10GRCm38
MGSCv37725,421,589 - 25,426,137 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36724,345,330 - 24,349,878 (+)NCBIMGSCv36mm8
Celera719,250,477 - 19,255,025 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map711.95NCBI
Lypd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8189,354,354 - 89,358,806 (+)NCBIGRCr8
mRatBN7.2180,226,449 - 80,230,901 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,226,449 - 80,230,901 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx185,618,908 - 85,623,352 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,169,886 - 94,174,330 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,374,657 - 87,379,095 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0181,499,856 - 81,504,306 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,499,821 - 81,504,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0182,757,258 - 82,761,708 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,917,952 - 79,922,402 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1179,996,062 - 80,000,513 (+)NCBI
Celera174,678,988 - 74,683,438 (+)NCBICelera
Cytogenetic Map1q21NCBI
Lypd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555551,228,879 - 1,234,097 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555551,229,559 - 1,233,932 (-)NCBIChiLan1.0ChiLan1.0
LYPD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22049,618,230 - 49,626,686 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11951,487,104 - 51,495,564 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01940,400,919 - 40,406,756 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11949,010,593 - 49,015,489 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1949,011,152 - 49,015,381 (-)Ensemblpanpan1.1panPan2
LYPD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11111,634,910 - 111,639,250 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1111,634,978 - 111,638,541 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,114,615 - 111,118,438 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01112,245,066 - 112,248,887 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1112,245,132 - 112,248,897 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11111,833,190 - 111,837,011 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01111,466,962 - 111,470,784 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01112,351,223 - 112,355,047 (+)NCBIUU_Cfam_GSD_1.0
Lypd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934916,346,360 - 16,350,420 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936706693,694 - 697,796 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936706693,703 - 697,714 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYPD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl650,341,161 - 50,345,338 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1650,341,157 - 50,346,407 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2646,262,470 - 46,267,707 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LYPD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1636,976,204 - 36,981,382 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl636,976,773 - 36,980,995 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607316,515,718 - 16,520,610 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000003287   ⟹   ENSHGLP00000003232
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249071,022,500 - 1,027,366 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000003288   ⟹   ENSHGLP00000003233
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249071,023,893 - 1,028,102 (-)Ensembl
RefSeq Acc Id: XM_004873076   ⟹   XP_004873133
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249071,024,083 - 1,028,179 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004873133 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB02503 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003233
  ENSHGLP00100056794
GenBank Protein JAO01589 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004873133   ⟸   XM_004873076
- UniProtKB: G5AZP2 (UniProtKB/TrEMBL),   A0A0P6JB95 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000003233   ⟸   ENSHGLT00000003288
RefSeq Acc Id: ENSHGLP00000003232   ⟸   ENSHGLT00000003287


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002401 Ensembl, ENTREZGENE
  ENSHGLG00100040276 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000003288 ENTREZGENE
  ENSHGLT00100081542 UniProtKB/TrEMBL
Gene3D-CATH 2.10.60.10 UniProtKB/TrEMBL
InterPro LY6_UPA_recep-like UniProtKB/TrEMBL
  Snake_toxin-like_sf UniProtKB/TrEMBL
KEGG Report hgl:101697999 UniProtKB/TrEMBL
NCBI Gene Lypd3 ENTREZGENE
PANTHER LY6/PLAUR DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  UROKINASE PLASMINOGEN ACTIVATOR SURFACE RECEPTOR-RELATED UniProtKB/TrEMBL
Pfam UPAR_LY6 UniProtKB/TrEMBL
SMART SM00134 UniProtKB/TrEMBL
Superfamily-SCOP SSF57302 UniProtKB/TrEMBL
UniProt A0A0P6JB95 ENTREZGENE, UniProtKB/TrEMBL
  G5AZP2 ENTREZGENE, UniProtKB/TrEMBL