Grm1 (glutamate metabotropic receptor 1) - Rat Genome Database

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Gene: Grm1 (glutamate metabotropic receptor 1) Heterocephalus glaber
Analyze
Symbol: Grm1
Name: glutamate metabotropic receptor 1
RGD ID: 18921570
Description: ENCODES a protein that exhibits G protein-coupled neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration (ortholog); glutamate receptor activity (ortholog); nuclear estrogen receptor binding (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); cellular response to electrical stimulus (ortholog); chemical synaptic transmission (ortholog); ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); autosomal recessive spinocerebellar ataxia 13 (ortholog); Bone Tissue Neoplasms (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); dendritic spine (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Metabotropic glutamate receptor 1; metabotropic glutamate receptor 1 isoform beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247537,994,321 - 8,436,120 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247537,994,419 - 8,498,243 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Grm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247537,994,321 - 8,436,120 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247537,994,419 - 8,498,243 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GRM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386146,027,707 - 146,437,601 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6146,027,646 - 146,437,601 (+)EnsemblGRCh38hg38GRCh38
GRCh376146,348,843 - 146,758,737 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366146,392,112 - 146,800,427 (+)NCBINCBI36Build 36hg18NCBI36
Build 346146,392,111 - 146,800,427NCBI
Celera6147,089,147 - 147,499,119 (+)NCBICelera
Cytogenetic Map6q24.3NCBI
HuRef6143,912,141 - 144,322,105 (+)NCBIHuRef
CHM1_16146,612,129 - 147,021,949 (+)NCBICHM1_1
T2T-CHM13v2.06147,215,189 - 147,630,683 (+)NCBIT2T-CHM13v2.0
Grm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391010,561,803 - 10,958,126 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1010,561,803 - 10,958,100 (-)EnsemblGRCm39 Ensembl
GRCm381010,686,059 - 11,082,382 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1010,686,059 - 11,082,356 (-)EnsemblGRCm38mm10GRCm38
MGSCv371010,408,551 - 10,802,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361010,378,943 - 10,772,546 (-)NCBIMGSCv36mm8
Celera1010,578,372 - 10,975,041 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map103.44NCBI
Grm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr816,878,542 - 7,273,447 (-)NCBIGRCr8
mRatBN7.215,058,285 - 5,453,170 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl15,058,292 - 5,453,170 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14,753,399 - 5,148,239 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0110,753,754 - 11,148,593 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.015,035,595 - 5,430,440 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014,753,141 - 5,165,859 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14,753,144 - 5,165,859 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.016,815,959 - 6,818,380 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.016,413,420 - 6,685,561 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415,318,617 - 5,744,593 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.115,318,616 - 5,744,590 (-)NCBI
Celera13,589,875 - 3,976,624 (-)NCBICelera
SHRSP x BN Map15.6799RGD
Cytogenetic Map1p13NCBI
Grm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543614,264,387 - 14,644,622 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543614,264,470 - 14,377,581 (-)NCBIChiLan1.0ChiLan1.0
GRM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25166,025,841 - 166,437,798 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16163,918,480 - 164,330,347 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06143,819,364 - 144,231,304 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16148,535,492 - 148,945,327 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6148,537,036 - 148,947,047 (+)Ensemblpanpan1.1panPan2
GRM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1137,205,817 - 37,600,048 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl137,206,542 - 37,598,134 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha138,098,496 - 38,490,369 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0137,381,684 - 37,767,160 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl137,381,685 - 37,768,980 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1137,260,006 - 37,645,862 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0137,124,615 - 37,516,108 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0137,448,182 - 37,846,268 (+)NCBIUU_Cfam_GSD_1.0
Grm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946132,167,285 - 132,544,694 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493662590,299 - 466,395 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493662591,229 - 468,242 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl119,183,218 - 19,572,853 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1119,183,221 - 19,572,853 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,438,453 - 21,816,533 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GRM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11325,380,855 - 25,816,945 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040201,340,468 - 201,782,555 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004846008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01033697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01002990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH166381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000025841   ⟹   ENSHGLP00000025614
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247537,994,321 - 8,436,120 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000025842   ⟹   ENSHGLP00000025615
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247537,994,321 - 8,436,120 (-)Ensembl
RefSeq Acc Id: XM_004846008   ⟹   XP_004846065
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247537,994,419 - 8,498,243 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004846065 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA98964 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025615
GenBank Protein JAO00643 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004846065   ⟸   XM_004846008
- UniProtKB: A0A0P6JAX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000025615   ⟸   ENSHGLT00000025842
RefSeq Acc Id: ENSHGLP00000025614   ⟸   ENSHGLT00000025841


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018239 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000025842 ENTREZGENE
Gene3D-CATH 2.10.50.30 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_CS UniProtKB/TrEMBL
  GPCR_3_mtglu_rcpt UniProtKB/TrEMBL
  GPCR_3_mtglu_rcpt_1 UniProtKB/TrEMBL
  Metabotropic_Glu_rcpt_Homer-bd UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
NCBI Gene Grm1 ENTREZGENE
PANTHER METABOTROPIC GLUTAMATE RECEPTOR UniProtKB/TrEMBL
  METABOTROPIC GLUTAMATE RECEPTOR 1 UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  GluR_Homer-bdg UniProtKB/TrEMBL
  NCD3G UniProtKB/TrEMBL
PRINTS GPCRMGR UniProtKB/TrEMBL
  MTABOTROPC1R UniProtKB/TrEMBL
  MTABOTROPICR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F3_2 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F3_3 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
SMART GluR_Homer-bdg UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
UniProt A0A0P6JAX8 ENTREZGENE, UniProtKB/TrEMBL