Rad52 (RAD52 homolog, DNA repair protein) - Rat Genome Database

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Gene: Rad52 (RAD52 homolog, DNA repair protein) Heterocephalus glaber
Analyze
Symbol: Rad52
Name: RAD52 homolog, DNA repair protein
RGD ID: 18921515
Description: ENCODES a protein that exhibits DNA binding (ortholog); identical protein binding (ortholog); single-stranded DNA binding (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); DNA double-strand break processing involved in repair via single-strand annealing (ortholog); double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH adrenocortical carcinoma (ortholog); colon cancer (ortholog); colorectal cancer (ortholog); FOUND IN protein-containing complex (ortholog); protein-DNA complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA repair protein RAD52 homolog; DNA repair protein RAD52-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247359,123,599 - 9,153,373 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rad52
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247359,123,599 - 9,153,373 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RAD52
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812911,736 - 991,122 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12911,736 - 990,053 (-)EnsemblGRCh38hg38GRCh38
GRCh37121,020,902 - 1,099,207 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612891,516 - 929,124 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412891,503 - 929,109NCBI
Celera122,627,552 - 2,665,203 (-)NCBICelera
Cytogenetic Map12p13.33NCBI
HuRef12872,427 - 910,057 (-)NCBIHuRef
CHM1_1121,020,392 - 1,057,188 (-)NCBICHM1_1
T2T-CHM13v2.012907,492 - 985,932 (-)NCBIT2T-CHM13v2.0
Rad52
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396119,878,781 - 119,899,789 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6119,879,659 - 119,899,789 (+)EnsemblGRCm39 Ensembl
GRCm386119,901,722 - 119,922,827 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6119,902,698 - 119,922,828 (+)EnsemblGRCm38mm10GRCm38
MGSCv376119,852,716 - 119,872,841 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366119,868,333 - 119,888,441 (+)NCBIMGSCv36mm8
Celera6121,739,874 - 121,759,754 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map656.86NCBI
Rad52
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84154,778,320 - 154,802,002 (+)NCBIGRCr8
mRatBN7.24153,106,062 - 153,128,598 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4153,106,062 - 153,128,207 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4159,382,308 - 159,403,320 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04155,166,037 - 155,187,045 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04153,789,386 - 153,810,390 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04152,429,826 - 152,451,875 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4152,430,187 - 152,451,609 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04219,515,666 - 219,536,494 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44156,281,973 - 156,295,238 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14156,519,008 - 156,540,079 (+)NCBI
Celera4141,966,210 - 141,979,264 (+)NCBICelera
Cytogenetic Map4q42NCBI
Rad52
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554546,215,129 - 6,231,726 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554546,206,195 - 6,227,859 (+)NCBIChiLan1.0ChiLan1.0
RAD52
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2106,410,061 - 6,489,983 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1126,403,853 - 6,486,270 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012986,372 - 1,066,708 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112946,717 - 1,027,078 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12946,825 - 985,668 (-)Ensemblpanpan1.1panPan2
RAD52
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12742,915,334 - 43,032,293 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2742,915,634 - 42,951,323 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha273,651,092 - 3,768,006 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02743,276,387 - 43,393,660 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2743,276,400 - 43,309,769 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12743,215,107 - 43,332,245 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02743,186,962 - 43,304,084 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0273,010,268 - 3,127,255 (+)NCBIUU_Cfam_GSD_1.0
Rad52
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945108,084,397 - 108,112,640 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366061,066,905 - 1,099,703 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366061,070,336 - 1,099,684 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAD52
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl568,143,646 - 68,169,670 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1568,140,846 - 68,223,587 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2570,410,118 - 70,490,100 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAD52
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111893,984 - 989,119 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11895,292 - 927,430 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660637,412,292 - 7,447,005 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004837582   ⟹   XP_004837639
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247359,123,599 - 9,153,373 (-)NCBI
RefSeq Acc Id: XM_021249316   ⟹   XP_021104975
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247359,123,599 - 9,153,364 (-)NCBI
RefSeq Acc Id: XM_021249324   ⟹   XP_021104983
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247359,123,599 - 9,143,886 (-)NCBI
RefSeq Acc Id: XM_021249327   ⟹   XP_021104986
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247359,123,599 - 9,143,977 (-)NCBI
RefSeq Acc Id: XM_021249336   ⟹   XP_021104995
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247359,123,599 - 9,143,995 (-)NCBI
RefSeq Acc Id: XM_021249339   ⟹   XP_021104998
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247359,123,599 - 9,143,868 (-)NCBI
RefSeq Acc Id: XM_021249349   ⟹   XP_021105008
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247359,123,599 - 9,136,678 (-)NCBI
RefSeq Acc Id: XM_021249352   ⟹   XP_021105011
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247359,123,599 - 9,153,373 (-)NCBI
RefSeq Acc Id: XM_021249354   ⟹   XP_021105013
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247359,123,599 - 9,153,368 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021105011   ⟸   XM_021249352
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004837639   ⟸   XM_004837582
- Peptide Label: isoform X1
- UniProtKB: G5BWP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105013   ⟸   XM_021249354
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021104975   ⟸   XM_021249316
- Peptide Label: isoform X1
- UniProtKB: G5BWP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104995   ⟸   XM_021249336
- Peptide Label: isoform X1
- UniProtKB: G5BWP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104986   ⟸   XM_021249327
- Peptide Label: isoform X1
- UniProtKB: G5BWP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104983   ⟸   XM_021249324
- Peptide Label: isoform X1
- UniProtKB: G5BWP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104998   ⟸   XM_021249339
- Peptide Label: isoform X1
- UniProtKB: G5BWP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105008   ⟸   XM_021249349
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000034178 UniProtKB/TrEMBL
  ENSHGLG00100008792 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000049133 UniProtKB/TrEMBL
  ENSHGLT00100087347 UniProtKB/TrEMBL
Gene3D-CATH 3.30.390.80 UniProtKB/TrEMBL
InterPro DNA_recomb/repair_Rad52 UniProtKB/TrEMBL
  Rad52_fam UniProtKB/TrEMBL
  Rad52_Rad59_Rad22 UniProtKB/TrEMBL
  Rad52_Rad59_Rad22_sf UniProtKB/TrEMBL
KEGG Report hgl:101706789 UniProtKB/TrEMBL
NCBI Gene Rad52 ENTREZGENE
PANTHER DNA REPAIR PROTEIN RAD52 HOMOLOG UniProtKB/TrEMBL
  PTHR12132 UniProtKB/TrEMBL
Pfam Rad52_Rad22 UniProtKB/TrEMBL
Superfamily-SCOP dsRNA-binding domain-like UniProtKB/TrEMBL
UniProt G5BWP4 ENTREZGENE, UniProtKB/TrEMBL