Cap1 (cyclase associated actin cytoskeleton regulatory protein 1) - Rat Genome Database

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Gene: Cap1 (cyclase associated actin cytoskeleton regulatory protein 1) Heterocephalus glaber
Analyze
Symbol: Cap1
Name: cyclase associated actin cytoskeleton regulatory protein 1
RGD ID: 18921393
Description: ENCODES a protein that exhibits actin binding (inferred); adenylate cyclase binding (inferred); INVOLVED IN actin cytoskeleton organization (ortholog); ameboidal-type cell migration (ortholog); cell morphogenesis (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); Chemical and Drug Induced Liver Injury (ortholog); genetic disease (ortholog); FOUND IN cortical actin cytoskeleton (ortholog); glutamatergic synapse (ortholog); postsynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adenylate cyclase associated protein 1; adenylyl cyclase-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476422,517,315 - 22,542,351 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476422,517,254 - 22,542,356 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476422,517,315 - 22,542,351 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476422,517,254 - 22,542,356 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38140,040,240 - 40,072,648 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl140,040,233 - 40,072,649 (+)EnsemblGRCh38hg38GRCh38
GRCh37140,505,912 - 40,538,320 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36140,278,842 - 40,310,908 (+)NCBINCBI36Build 36hg18NCBI36
Celera138,788,546 - 38,820,608 (+)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef138,624,359 - 38,656,372 (+)NCBIHuRef
CHM1_1140,621,882 - 40,653,922 (+)NCBICHM1_1
T2T-CHM13v2.0139,909,560 - 39,942,077 (+)NCBIT2T-CHM13v2.0
Cap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394122,752,841 - 122,779,869 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4122,752,840 - 122,779,849 (-)EnsemblGRCm39 Ensembl
GRCm384122,859,048 - 122,886,076 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4122,859,047 - 122,886,056 (-)EnsemblGRCm38mm10GRCm38
MGSCv374122,536,471 - 122,563,124 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364122,361,358 - 122,374,759 (-)NCBIMGSCv36mm8
Celera4121,189,663 - 121,215,875 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.27NCBI
Cap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85140,427,265 - 140,507,678 (-)NCBIGRCr8
mRatBN7.25135,142,108 - 135,168,885 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5135,142,112 - 135,168,769 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5137,848,892 - 137,875,074 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05139,619,408 - 139,645,571 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05139,625,992 - 139,652,167 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05140,559,195 - 140,585,494 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5140,559,206 - 140,585,408 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05144,350,194 - 144,376,587 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45142,174,441 - 142,201,120 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15142,179,669 - 142,206,346 (-)NCBI
Celera5133,680,751 - 133,706,934 (-)NCBICelera
Cytogenetic Map5q36NCBI
Cap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545217,503,531 - 17,528,049 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545217,503,530 - 17,528,049 (+)NCBIChiLan1.0ChiLan1.0
CAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21186,753,897 - 186,786,869 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11185,891,517 - 185,926,819 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0139,325,715 - 39,358,365 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1140,651,089 - 40,683,777 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl140,651,262 - 40,683,777 (+)Ensemblpanpan1.1panPan2
CAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1152,886,661 - 2,913,975 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha153,143,694 - 3,171,063 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0152,973,496 - 3,000,882 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl152,973,512 - 3,000,863 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1152,880,544 - 2,907,904 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0152,940,448 - 2,967,801 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0152,956,849 - 2,984,219 (-)NCBIUU_Cfam_GSD_1.0
Cap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505856,029,613 - 56,056,840 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647421,854,330 - 21,881,622 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647421,854,454 - 21,881,622 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl695,812,179 - 95,840,570 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1695,811,485 - 95,840,576 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2689,122,573 - 89,128,047 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12092,833,112 - 92,865,258 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2092,829,735 - 92,864,697 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603323,973,782 - 24,006,213 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000016128   ⟹   ENSHGLP00000015961
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476422,517,315 - 22,542,351 (+)Ensembl
RefSeq Acc Id: XM_004851042   ⟹   XP_004851099
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476422,517,299 - 22,542,356 (+)NCBI
RefSeq Acc Id: XM_004851043   ⟹   XP_004851100
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476422,517,300 - 22,542,356 (+)NCBI
RefSeq Acc Id: XM_021263402   ⟹   XP_021119061
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476422,517,299 - 22,542,356 (+)NCBI
RefSeq Acc Id: XM_021263403   ⟹   XP_021119062
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476422,517,254 - 22,542,356 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004851099 (Get FASTA)   NCBI Sequence Viewer  
  XP_004851100 (Get FASTA)   NCBI Sequence Viewer  
  XP_021119061 (Get FASTA)   NCBI Sequence Viewer  
  XP_021119062 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015961
GenBank Protein JAN97522 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021119062   ⟸   XM_021263403
- UniProtKB: A0A0P6JAU9 (UniProtKB/TrEMBL),   G5BZ60 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004851099   ⟸   XM_004851042
- UniProtKB: A0A0P6JAU9 (UniProtKB/TrEMBL),   G5BZ60 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021119061   ⟸   XM_021263402
- UniProtKB: A0A0P6JAU9 (UniProtKB/TrEMBL),   G5BZ60 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004851100   ⟸   XM_004851043
- UniProtKB: A0A0P6JAU9 (UniProtKB/TrEMBL),   G5BZ60 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000015961   ⟸   ENSHGLT00000016128


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011409 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016128 ENTREZGENE
Gene3D-CATH 1.25.40.330 UniProtKB/TrEMBL
  2.160.20.70 UniProtKB/TrEMBL
InterPro Adenylate_cyclase-assoc_CAP UniProtKB/TrEMBL
  Adenylate_cyclase-assoc_CAP_C UniProtKB/TrEMBL
  Adenylate_cyclase-assoc_CAP_N UniProtKB/TrEMBL
  C-CAP_CF_C-like UniProtKB/TrEMBL
  CAP/MinC_C UniProtKB/TrEMBL
  CAP_C_sf UniProtKB/TrEMBL
  CAP_CS_C UniProtKB/TrEMBL
  CAP_CS_N UniProtKB/TrEMBL
  CAP_N_sf UniProtKB/TrEMBL
  CARP_motif UniProtKB/TrEMBL
KEGG Report hgl:101717659 UniProtKB/TrEMBL
NCBI Gene Cap1 ENTREZGENE
PANTHER PTHR10652 UniProtKB/TrEMBL
  PTHR10652:SF1 UniProtKB/TrEMBL
Pfam CAP_C UniProtKB/TrEMBL
  CAP_N UniProtKB/TrEMBL
PROSITE C_CAP_COFACTOR_C UniProtKB/TrEMBL
  CAP_1 UniProtKB/TrEMBL
  CAP_2 UniProtKB/TrEMBL
SMART CARP UniProtKB/TrEMBL
Superfamily-SCOP SSF101278 UniProtKB/TrEMBL
  SSF69340 UniProtKB/TrEMBL
UniProt A0A0P6JAU9 ENTREZGENE, UniProtKB/TrEMBL
  G5BZ60 ENTREZGENE, UniProtKB/TrEMBL