Paxip1 (PAX interacting protein 1) - Rat Genome Database

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Gene: Paxip1 (PAX interacting protein 1) Heterocephalus glaber
Analyze
Symbol: Paxip1
Name: PAX interacting protein 1
RGD ID: 18921375
Description: INVOLVED IN adipose tissue development (ortholog); chorion development (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); holoprosencephaly 3 (ortholog); FOUND IN histone methyltransferase complex (ortholog); MLL3/4 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PAX-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248002,653,732 - 2,707,161 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248002,653,381 - 2,709,261 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Paxip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248002,653,732 - 2,707,161 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248002,653,381 - 2,709,261 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PAXIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387154,943,690 - 155,003,411 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7154,943,687 - 155,003,124 (-)EnsemblGRCh38hg38GRCh38
GRCh377154,735,400 - 154,794,834 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367154,366,333 - 154,425,615 (-)NCBINCBI36Build 36hg18NCBI36
Build 347154,173,048 - 154,232,306NCBI
Celera7149,152,557 - 149,211,836 (-)NCBICelera
Cytogenetic Map7q36.2NCBI
HuRef7148,468,426 - 148,527,705 (-)NCBIHuRef
CHM1_17154,743,784 - 154,803,135 (-)NCBICHM1_1
T2T-CHM13v2.07156,118,967 - 156,178,685 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27153,963,422 - 154,022,702 (-)NCBI
Paxip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39527,947,044 - 27,999,326 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl527,945,078 - 27,996,689 (-)EnsemblGRCm39 Ensembl
GRCm38527,740,080 - 27,791,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl527,740,080 - 27,791,691 (-)EnsemblGRCm38mm10GRCm38
MGSCv37528,067,205 - 28,117,879 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36528,071,452 - 28,122,126 (-)NCBIMGSCv36mm8
Celera525,287,864 - 25,339,859 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map513.23NCBI
Paxip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr848,258,930 - 8,310,490 (+)NCBIGRCr8
mRatBN7.247,525,132 - 7,576,659 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl47,525,004 - 7,576,548 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx412,535,163 - 12,586,700 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.048,349,408 - 8,400,945 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.046,695,594 - 6,747,133 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.043,956,931 - 4,008,326 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl43,959,640 - 4,008,326 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.043,996,608 - 4,047,988 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.442,790,532 - 2,839,246 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.142,717,068 - 2,839,242 (+)NCBI
Celera42,704,414 - 2,753,568 (-)NCBICelera
Cytogenetic Map4q11NCBI
Paxip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554918,177,422 - 8,219,766 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554918,177,422 - 8,219,764 (-)NCBIChiLan1.0ChiLan1.0
PAXIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26191,372,868 - 191,432,198 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1743,383,480 - 43,442,465 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07146,546,658 - 146,605,912 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17158,274,193 - 158,329,139 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7158,276,798 - 158,330,911 (-)Ensemblpanpan1.1panPan2
PAXIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11618,066,289 - 18,116,007 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1618,066,246 - 18,112,506 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1618,699,205 - 18,749,159 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01619,794,777 - 19,844,723 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1619,794,777 - 19,844,705 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11618,166,085 - 18,216,026 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01618,746,356 - 18,796,284 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01618,799,076 - 18,849,057 (-)NCBIUU_Cfam_GSD_1.0
Paxip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051183,415,214 - 3,463,432 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365279,440,036 - 9,484,245 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365279,440,129 - 9,488,215 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAXIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl183,066,848 - 3,111,240 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1183,066,853 - 3,111,239 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2183,227,951 - 3,250,496 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAXIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121123,095,968 - 123,156,157 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21123,095,966 - 123,155,800 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607219,215,604 - 19,275,681 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000025495   ⟹   ENSHGLP00000025273
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248002,653,732 - 2,707,161 (+)Ensembl
RefSeq Acc Id: XM_004860343   ⟹   XP_004860400
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248002,653,685 - 2,709,261 (+)NCBI
RefSeq Acc Id: XM_021240827   ⟹   XP_021096486
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248002,653,685 - 2,709,261 (+)NCBI
RefSeq Acc Id: XM_021240828   ⟹   XP_021096487
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248002,653,685 - 2,709,261 (+)NCBI
RefSeq Acc Id: XM_021240829   ⟹   XP_021096488
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248002,653,381 - 2,709,261 (+)NCBI
RefSeq Acc Id: XM_021240830   ⟹   XP_021096489
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248002,653,685 - 2,709,261 (+)NCBI
RefSeq Acc Id: XM_021240831   ⟹   XP_021096490
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248002,653,685 - 2,709,261 (+)NCBI
RefSeq Acc Id: XM_021240832   ⟹   XP_021096491
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248002,661,235 - 2,709,261 (+)NCBI
RefSeq Acc Id: XM_021240833   ⟹   XP_021096492
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248002,670,364 - 2,709,261 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021096488   ⟸   XM_021240829
- Peptide Label: isoform X3
- UniProtKB: G5AVC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096486   ⟸   XM_021240827
- Peptide Label: isoform X1
- UniProtKB: G5AVC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096487   ⟸   XM_021240828
- Peptide Label: isoform X2
- UniProtKB: G5AVC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096489   ⟸   XM_021240830
- Peptide Label: isoform X4
- UniProtKB: G5AVC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004860400   ⟸   XM_004860343
- Peptide Label: isoform X5
- UniProtKB: G5AVC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096490   ⟸   XM_021240831
- Peptide Label: isoform X6
- UniProtKB: G5AVC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096491   ⟸   XM_021240832
- Peptide Label: isoform X7
- UniProtKB: G5AVC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096492   ⟸   XM_021240833
- Peptide Label: isoform X8
- UniProtKB: G5AVC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000025273   ⟸   ENSHGLT00000025495


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018007 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000025495 ENTREZGENE
Gene3D-CATH BRCT domain UniProtKB/TrEMBL
InterPro BRCT_dom UniProtKB/TrEMBL
  BRCT_dom_sf UniProtKB/TrEMBL
NCBI Gene Paxip1 ENTREZGENE
PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN UniProtKB/TrEMBL
  PAX-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
Pfam BRCT UniProtKB/TrEMBL
  BRCT_2 UniProtKB/TrEMBL
  PTCB-BRCT UniProtKB/TrEMBL
  RTT107_BRCT_5 UniProtKB/TrEMBL
PROSITE BRCT UniProtKB/TrEMBL
SMART BRCT UniProtKB/TrEMBL
Superfamily-SCOP BRCT domain UniProtKB/TrEMBL
UniProt G5AVC7 ENTREZGENE, UniProtKB/TrEMBL