Gle1 (GLE1 RNA export mediator) - Rat Genome Database

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Gene: Gle1 (GLE1 RNA export mediator) Heterocephalus glaber
Analyze
Symbol: Gle1
Name: GLE1 RNA export mediator
RGD ID: 18921294
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN mRNA transport (inferred); poly(A)+ mRNA export from nucleus (inferred); protein transport (inferred); PARTICIPATES IN NXF1-NXT1 export pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Congenital Arthrogryposis with Anterior Horn Cell Disease (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GLE1 RNA export mediator homolog; nucleoporin GLE1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,400,263 - 6,427,780 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247606,398,959 - 6,427,881 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gle1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,400,263 - 6,427,780 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247606,398,959 - 6,427,881 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GLE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,504,692 - 128,542,288 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9128,504,655 - 128,543,874 (+)EnsemblGRCh38hg38GRCh38
GRCh379131,266,971 - 131,304,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,306,792 - 130,344,401 (+)NCBINCBI36Build 36hg18NCBI36
Build 349128,346,524 - 128,381,708NCBI
Celera9101,917,784 - 101,955,385 (+)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,879,534 - 100,916,497 (+)NCBIHuRef
CHM1_19131,417,671 - 131,455,555 (+)NCBICHM1_1
T2T-CHM13v2.09140,711,552 - 140,749,139 (+)NCBIT2T-CHM13v2.0
Gle1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39229,825,421 - 29,849,444 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl229,825,438 - 29,850,383 (+)EnsemblGRCm39 Ensembl
GRCm38229,935,409 - 29,959,432 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl229,935,426 - 29,960,371 (+)EnsemblGRCm38mm10GRCm38
MGSCv37229,790,929 - 29,814,952 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36229,757,436 - 29,780,664 (+)NCBIMGSCv36mm8
Celera229,639,347 - 29,663,372 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map220.88NCBI
Gle1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8333,607,160 - 33,638,879 (+)NCBIGRCr8
mRatBN7.2313,209,312 - 13,237,018 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl313,209,322 - 13,237,379 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx316,284,072 - 16,308,209 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0324,869,035 - 24,893,166 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0323,119,866 - 23,143,902 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.038,498,098 - 8,530,218 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,498,122 - 8,526,771 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0313,842,286 - 13,874,233 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.438,924,783 - 8,948,712 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.138,925,082 - 8,949,012 (+)NCBI
Celera37,986,359 - 8,010,609 (+)NCBICelera
Cytogenetic Map3p12NCBI
Gle1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955570970,249 - 1,004,443 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955570970,267 - 1,004,525 (+)NCBIChiLan1.0ChiLan1.0
GLE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21110,809,781 - 10,847,036 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1910,813,007 - 10,849,391 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,627,336 - 99,664,537 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19128,294,607 - 128,331,301 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,294,607 - 128,331,301 (+)Ensemblpanpan1.1panPan2
GLE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,024,673 - 55,059,297 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,024,679 - 55,059,220 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,219,221 - 54,254,594 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0955,945,910 - 55,981,669 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl955,945,738 - 55,981,654 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,705,230 - 54,741,086 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,019,202 - 55,055,497 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,111,743 - 55,147,456 (-)NCBIUU_Cfam_GSD_1.0
Gle1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,261,442 - 196,295,252 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648716,031,824 - 16,063,803 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648716,031,832 - 16,063,779 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1268,894,276 - 268,922,742 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11268,894,281 - 268,922,752 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,917,800 - 302,946,270 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,595,379 - 9,631,193 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,594,910 - 9,631,405 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660796,616,681 - 6,652,731 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000023167   ⟹   ENSHGLP00000022953
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247606,400,263 - 6,427,780 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000023168   ⟹   ENSHGLP00000022954
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247606,400,263 - 6,427,780 (-)Ensembl
RefSeq Acc Id: XM_004849199   ⟹   XP_004849256
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247606,398,959 - 6,427,881 (-)NCBI
RefSeq Acc Id: XM_004849200   ⟹   XP_004849257
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247606,398,959 - 6,427,881 (-)NCBI
RefSeq Acc Id: XM_021261924   ⟹   XP_021117583
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247606,398,959 - 6,427,881 (-)NCBI
RefSeq Acc Id: XR_002396543
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247606,400,289 - 6,427,881 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004849256 (Get FASTA)   NCBI Sequence Viewer  
  XP_004849257 (Get FASTA)   NCBI Sequence Viewer  
  XP_021117583 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022953
  ENSHGLP00000022954
GenBank Protein JAO00886 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021117583   ⟸   XM_021261924
- Peptide Label: isoform X3
- UniProtKB: G5ASE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004849256   ⟸   XM_004849199
- Peptide Label: isoform X2
- UniProtKB: A0A0N8EU27 (UniProtKB/TrEMBL),   G5ASE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004849257   ⟸   XM_004849200
- Peptide Label: isoform X1
- UniProtKB: G5ASE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000022954   ⟸   ENSHGLT00000023168
RefSeq Acc Id: ENSHGLP00000022953   ⟸   ENSHGLT00000023167


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016370 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000023167 ENTREZGENE
  ENSHGLT00000023168 ENTREZGENE
Gene3D-CATH 1.25.40.510 UniProtKB/TrEMBL
InterPro GLE1 UniProtKB/TrEMBL
  GLE1-like_sf UniProtKB/TrEMBL
KEGG Report hgl:101722063 UniProtKB/TrEMBL
NCBI Gene Gle1 ENTREZGENE
PANTHER NUCLEOPORIN GLE1 UniProtKB/TrEMBL
  PTHR12960 UniProtKB/TrEMBL
Pfam GLE1 UniProtKB/TrEMBL
UniProt A0A0N8EU27 ENTREZGENE, UniProtKB/TrEMBL
  G5ASE5 ENTREZGENE, UniProtKB/TrEMBL