Fam98a (family with sequence similarity 98 member A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Fam98a (family with sequence similarity 98 member A) Heterocephalus glaber
Analyze
Symbol: Fam98a
Name: family with sequence similarity 98 member A
RGD ID: 18921058
Description: ENCODES a protein that exhibits protein methyltransferase activity (ortholog); INVOLVED IN lysosome localization (ortholog); positive regulation of cell population proliferation (ortholog); positive regulation of gene expression (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN tRNA-splicing ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein FAM98A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473815,251,594 - 15,266,696 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473815,251,594 - 15,266,508 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Fam98a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473815,251,594 - 15,266,696 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473815,251,594 - 15,266,508 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FAM98A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38233,583,660 - 33,599,299 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl233,532,744 - 33,599,347 (-)EnsemblGRCh38hg38GRCh38
GRCh37233,808,727 - 33,824,366 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36233,662,233 - 33,677,866 (-)NCBINCBI36Build 36hg18NCBI36
Celera233,647,433 - 33,663,066 (-)NCBICelera
Cytogenetic Map2p22.3NCBI
HuRef233,542,677 - 33,558,311 (-)NCBIHuRef
CHM1_1233,738,047 - 33,753,682 (-)NCBICHM1_1
T2T-CHM13v2.0233,629,816 - 33,645,413 (-)NCBIT2T-CHM13v2.0
Fam98a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391775,844,080 - 75,858,941 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1775,844,081 - 75,858,941 (-)EnsemblGRCm39 Ensembl
GRCm381775,537,085 - 75,551,946 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1775,537,086 - 75,551,946 (-)EnsemblGRCm38mm10GRCm38
MGSCv371775,936,426 - 75,951,286 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361775,442,151 - 75,456,903 (-)NCBIMGSCv36mm8
Celera1779,829,748 - 79,844,400 (-)NCBICelera
Cytogenetic Map17E2NCBI
cM Map1746.62NCBI
Fam98a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8625,626,108 - 25,640,767 (+)NCBIGRCr8
mRatBN7.2619,874,082 - 19,888,744 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl619,874,071 - 19,888,742 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx620,204,274 - 20,218,932 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0620,520,109 - 20,534,772 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0620,000,542 - 20,015,205 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0621,051,327 - 21,065,986 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl621,051,327 - 21,065,986 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0630,945,057 - 30,959,716 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4619,787,146 - 19,801,805 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1619,790,098 - 19,804,756 (+)NCBI
Celera619,443,061 - 19,457,708 (+)NCBICelera
Cytogenetic Map6q12NCBI
Fam98a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554411,799,453 - 1,814,652 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554411,799,453 - 1,814,096 (-)NCBIChiLan1.0ChiLan1.0
FAM98A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21292,903,075 - 92,918,717 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A92,907,047 - 92,922,689 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A33,591,783 - 33,607,386 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A34,303,009 - 34,318,627 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A34,303,009 - 34,318,627 (-)Ensemblpanpan1.1panPan2
FAM98A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11726,671,254 - 26,687,808 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1726,671,948 - 26,688,447 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1726,463,930 - 26,479,926 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01727,240,776 - 27,256,783 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1727,240,780 - 27,256,742 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11726,536,375 - 26,552,368 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01726,610,259 - 26,626,280 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01726,766,760 - 26,782,758 (-)NCBIUU_Cfam_GSD_1.0
Fam98a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629270,747,061 - 70,761,936 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649377,815 - 90,702 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649377,729 - 92,427 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM98A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3106,061,572 - 106,081,174 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13106,061,567 - 106,081,177 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23112,931,682 - 112,949,328 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM98A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11473,861,331 - 73,877,277 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604538,134,240 - 38,149,846 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000019136   ⟹   ENSHGLP00000018947
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473815,251,594 - 15,266,696 (-)Ensembl
RefSeq Acc Id: XM_004839288   ⟹   XP_004839345
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473815,251,594 - 15,266,508 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004839345 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018947
GenBank Protein JAN98008 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004839345   ⟸   XM_004839288
- UniProtKB: A0A0P6K245 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000018947   ⟸   ENSHGLT00000019136


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013582 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019136 ENTREZGENE
InterPro FAM98 UniProtKB/TrEMBL
KEGG Report hgl:101719310 UniProtKB/TrEMBL
NCBI Gene Fam98a ENTREZGENE
PANTHER PROTEIN FAM98A UniProtKB/TrEMBL
  PTHR31353 UniProtKB/TrEMBL
Pfam DUF2465 UniProtKB/TrEMBL
UniProt A0A0P6K245 ENTREZGENE, UniProtKB/TrEMBL