CUNH16orf74 (chromosome unknown C16orf74 homolog) - Rat Genome Database

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Gene: CUNH16orf74 (chromosome unknown C16orf74 homolog) Heterocephalus glaber
Analyze
Symbol: CUNH16orf74 (Ensembl: C16orf74)
Name: chromosome unknown C16orf74 homolog
RGD ID: 18920918
Description: ASSOCIATED WITH genetic disease (ortholog); persistent fetal circulation syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein C16orf74 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247462,124,160 - 2,141,567 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247462,119,090 - 2,144,239 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
CUNH16orf74
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247462,124,160 - 2,141,567 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247462,119,090 - 2,144,239 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
C16orf74
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381685,707,517 - 85,751,096 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1685,690,084 - 85,751,129 (-)EnsemblGRCh38hg38GRCh38
GRCh371685,741,123 - 85,784,702 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361684,298,624 - 84,342,190 (-)NCBINCBI36Build 36hg18NCBI36
Celera1670,044,265 - 70,087,824 (-)NCBICelera
Cytogenetic Map16q24.1NCBI
HuRef1671,483,238 - 71,526,434 (-)NCBIHuRef
CHM1_11687,152,497 - 87,196,246 (-)NCBICHM1_1
T2T-CHM13v2.01691,773,042 - 91,816,616 (-)NCBIT2T-CHM13v2.0
1190005I06Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398121,335,341 - 121,361,129 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8121,335,341 - 121,374,371 (-)EnsemblGRCm39 Ensembl
GRCm388120,608,602 - 120,634,390 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8120,608,602 - 120,647,632 (-)EnsemblGRCm38mm10GRCm38
MGSCv378123,132,502 - 123,158,282 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368123,494,579 - 123,520,359 (-)NCBIMGSCv36mm8
MGSCv368120,639,707 - 120,665,625 (-)NCBIMGSCv36mm8
Celera8124,824,261 - 124,844,288 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map869.92NCBI
C19h16orf74
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81965,568,997 - 65,594,994 (-)NCBIGRCr8
mRatBN7.21948,660,288 - 48,686,287 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1948,660,288 - 48,686,349 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1955,454,519 - 55,480,536 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01956,135,287 - 56,161,286 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01958,349,131 - 58,375,582 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01954,184,554 - 54,210,872 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,184,946 - 54,210,515 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,906,438 - 64,931,464 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41950,963,265 - 50,989,667 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11950,968,145 - 50,994,344 (-)NCBI
Celera1947,913,225 - 47,939,423 (-)NCBICelera
Cytogenetic Map19q12NCBI
CUNH16orf74
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955541824,183 - 843,420 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955541824,381 - 843,420 (-)NCBIChiLan1.0ChiLan1.0
C18H16orf74
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21895,457,645 - 95,501,855 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116101,374,921 - 101,419,111 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01666,374,434 - 66,418,478 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11685,711,556 - 85,755,671 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1685,694,710 - 85,755,671 (-)Ensemblpanpan1.1panPan2
C5H16orf74
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1566,945,022 - 66,969,301 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl566,947,136 - 66,979,907 (+)EnsemblCanFam3.1canFam3CanFam3.1
CUNH16orf74
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934926,976,740 - 26,998,629 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366412,730,252 - 2,752,176 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C6H16orf74
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl63,166,929 - 3,217,327 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.163,156,781 - 3,211,165 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.263,490,493 - 3,520,510 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH16orf74
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1571,114,015 - 71,158,207 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660474,581,633 - 4,626,465 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004842749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01025594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000017372   ⟹   ENSHGLP00000017199
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247462,124,160 - 2,141,567 (-)Ensembl
RefSeq Acc Id: XM_004842749   ⟹   XP_004842806
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247462,119,090 - 2,144,239 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004842806 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017199
Reference Protein Sequences
RefSeq Acc Id: XP_004842806   ⟸   XM_004842749
- UniProtKB: G5BJF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000017199   ⟸   ENSHGLT00000017372


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012315 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017372 ENTREZGENE
InterPro DUF4597 UniProtKB/TrEMBL
NCBI Gene CUNH16orf74 ENTREZGENE
PANTHER GENE, 27021-RELATED UniProtKB/TrEMBL
  SIMILAR TO 1190005I06RIK PROTEIN UniProtKB/TrEMBL
Pfam DUF4597 UniProtKB/TrEMBL
UniProt G5BJF9 ENTREZGENE, UniProtKB/TrEMBL