Plac1 (placenta enriched 1) - Rat Genome Database

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Gene: Plac1 (placenta enriched 1) Heterocephalus glaber
Analyze
Symbol: Plac1
Name: placenta enriched 1
RGD ID: 18920879
Description: INVOLVED IN spongiotrophoblast layer developmental growth (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: placenta specific 1; Placenta-specific protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479714,259,180 - 14,435,455 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
Plac1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479714,259,180 - 14,435,455 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PLAC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X134,565,838 - 134,764,322 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX134,565,838 - 134,764,322 (-)EnsemblGRCh38hg38GRCh38
GRCh37X133,699,868 - 133,898,352 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X133,527,539 - 133,620,179 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X133,425,392 - 133,518,033NCBI
CeleraX134,086,692 - 134,179,370 (-)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX123,098,723 - 123,191,076 (-)NCBIHuRef
CHM1_1X133,611,604 - 133,704,211 (-)NCBICHM1_1
T2T-CHM13v2.0X132,891,012 - 133,089,435 (-)NCBIT2T-CHM13v2.0
Plac1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X52,158,870 - 52,328,969 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX52,158,872 - 52,328,988 (-)EnsemblGRCm39 Ensembl
GRCm38X53,069,993 - 53,240,110 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX53,069,995 - 53,240,111 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X50,423,179 - 50,467,582 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X49,314,629 - 49,359,032 (-)NCBIMGSCv36mm8
CeleraX40,495,994 - 40,539,998 (-)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX29.31NCBI
Plac1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X137,740,896 - 137,874,688 (-)NCBIGRCr8
mRatBN7.2X132,821,347 - 132,955,143 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX132,821,347 - 132,985,668 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX134,981,404 - 135,022,313 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X138,564,253 - 138,605,155 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X136,129,952 - 136,170,854 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X157,931,450 - 158,133,506 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX158,053,164 - 158,133,504 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 EnsemblX158,569,056 - 158,569,577 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X152,508,501 - 152,758,813 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X140,014,910 - 140,055,813 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic MapXq36NCBI
Plac1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955473264,265 - 415,616 (+)NCBIChiLan1.0ChiLan1.0
PLAC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X134,001,183 - 134,169,153 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X134,004,781 - 134,005,817 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X123,715,148 - 123,913,821 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X134,013,624 - 134,159,805 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX134,013,830 - 134,014,468 (-)Ensemblpanpan1.1panPan2
PLAC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X105,200,725 - 105,390,714 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX91,311,411 - 91,356,422 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X107,052,170 - 107,053,059 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX107,052,230 - 107,052,868 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X104,473,935 - 104,518,964 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X106,339,901 - 106,384,891 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X106,131,606 - 106,176,593 (-)NCBIUU_Cfam_GSD_1.0
Plac1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X103,353,828 - 103,399,620 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936691602,707 - 603,342 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLAC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX110,403,437 - 110,539,258 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X110,403,257 - 110,592,117 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PLAC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X109,735,568 - 109,934,564 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX109,736,338 - 109,736,976 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606547,340,699 - 47,540,364 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004921149   ⟹   XP_004921206
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479714,259,180 - 14,435,455 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004921206   ⟸   XM_004921149
- UniProtKB: G5C257 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000034652 UniProtKB/TrEMBL
  ENSHGLG00100042531 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000055987 UniProtKB/TrEMBL
  ENSHGLT00000067065 UniProtKB/TrEMBL
  ENSHGLT00000072867 UniProtKB/TrEMBL
  ENSHGLT00000076086 UniProtKB/TrEMBL
  ENSHGLT00000076685 UniProtKB/TrEMBL
  ENSHGLT00000079596 UniProtKB/TrEMBL
  ENSHGLT00100044500 UniProtKB/TrEMBL
  ENSHGLT00100044702 UniProtKB/TrEMBL
  ENSHGLT00100052359 UniProtKB/TrEMBL
  ENSHGLT00100053953 UniProtKB/TrEMBL
  ENSHGLT00100060836 UniProtKB/TrEMBL
  ENSHGLT00100086583 UniProtKB/TrEMBL
Gene3D-CATH Zona pellucida, ZP-N domain UniProtKB/TrEMBL
InterPro PLAC1_fam UniProtKB/TrEMBL
  ZP_dom UniProtKB/TrEMBL
KEGG Report hgl:101706083 UniProtKB/TrEMBL
NCBI Gene Plac1 ENTREZGENE
PANTHER PTHR14380 UniProtKB/TrEMBL
  PTHR14380:SF2 UniProtKB/TrEMBL
Pfam Zona_pellucida UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt G5C257 ENTREZGENE, UniProtKB/TrEMBL