Aamp (angio associated migratory cell protein) - Rat Genome Database

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Gene: Aamp (angio associated migratory cell protein) Heterocephalus glaber
Analyze
Symbol: Aamp
Name: angio associated migratory cell protein
RGD ID: 18920849
Description: ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN smooth muscle cell migration (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); genetic disease (ortholog); FOUND IN cell surface (ortholog); intercellular bridge (ortholog); microtubule cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Angio-associated migratory cell protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,761,254 - 6,768,545 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,761,343 - 6,766,573 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Aamp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,761,254 - 6,768,545 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,761,343 - 6,766,573 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
AAMP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,264,129 - 218,270,137 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,264,129 - 218,270,178 (-)EnsemblGRCh38hg38GRCh38
GRCh372219,128,852 - 219,134,860 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,837,096 - 218,843,137 (-)NCBINCBI36Build 36hg18NCBI36
Celera2212,895,431 - 212,901,472 (-)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2210,981,949 - 210,987,990 (-)NCBIHuRef
CHM1_12219,135,341 - 219,141,382 (-)NCBICHM1_1
T2T-CHM13v2.02218,749,830 - 218,755,838 (-)NCBIT2T-CHM13v2.0
Aamp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,318,999 - 74,324,833 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,318,999 - 74,323,897 (-)EnsemblGRCm39 Ensembl
GRCm38174,279,840 - 74,284,738 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,279,840 - 74,284,738 (-)EnsemblGRCm38mm10GRCm38
MGSCv37174,326,414 - 74,331,312 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,213,054 - 74,217,873 (-)NCBIMGSCv36mm8
Celera174,841,193 - 74,846,091 (-)NCBICelera
Cytogenetic Map1C3NCBI
cM Map138.53NCBI
Aamp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,312,519 - 83,318,325 (-)NCBIGRCr8
mRatBN7.2975,863,382 - 75,869,188 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl975,863,389 - 75,868,547 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,308,918 - 84,314,727 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,437,839 - 89,443,648 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0987,824,055 - 87,829,864 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,560,836 - 81,566,642 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,560,842 - 81,566,642 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,327,383 - 81,333,189 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4973,606,372 - 73,612,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1973,753,361 - 73,758,333 (-)NCBI
Celera973,439,867 - 73,445,673 (-)NCBICelera
Cytogenetic Map9q33NCBI
Aamp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545315,104,229 - 15,112,468 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545315,104,229 - 15,109,487 (+)NCBIChiLan1.0ChiLan1.0
AAMP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213120,896,307 - 120,902,508 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B120,911,274 - 120,917,496 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B105,523,495 - 105,529,550 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,121,531 - 224,127,369 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,121,531 - 224,127,369 (-)Ensemblpanpan1.1panPan2
AAMP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13724,943,660 - 24,948,589 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3724,937,081 - 24,948,529 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3725,764,204 - 25,768,657 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03724,959,719 - 24,964,653 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3724,959,719 - 24,964,646 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13724,865,431 - 24,869,882 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03724,799,684 - 24,804,137 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03724,819,318 - 24,823,771 (-)NCBIUU_Cfam_GSD_1.0
Aamp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,452,032 - 174,456,962 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936569790,510 - 799,896 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936569794,814 - 799,770 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AAMP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,339,768 - 120,346,197 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,339,765 - 120,345,451 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
AAMP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,145,818 - 104,151,782 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604095,249,960 - 95,256,004 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000023172   ⟹   ENSHGLP00000022958
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248236,761,254 - 6,768,545 (+)Ensembl
RefSeq Acc Id: XM_004864604   ⟹   XP_004864661
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248236,761,343 - 6,766,573 (+)NCBI
RefSeq Acc Id: XM_004864605   ⟹   XP_004864662
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248236,761,344 - 6,766,573 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004864661 (Get FASTA)   NCBI Sequence Viewer  
  XP_004864662 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB02454 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022958
Reference Protein Sequences
RefSeq Acc Id: XP_004864661   ⟸   XM_004864604
- Peptide Label: isoform X1
- UniProtKB: G5AZJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004864662   ⟸   XM_004864605
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000022958   ⟸   ENSHGLT00000023172


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016373 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000023172 ENTREZGENE
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report hgl:101711274 UniProtKB/TrEMBL
NCBI Gene Aamp ENTREZGENE
PANTHER ANGIO-ASSOCIATED MIGRATORY CELL PROTEIN UniProtKB/TrEMBL
  MITOCHONDRIAL DIVISION PROTEIN 1-RELATED UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt G5AZJ3 ENTREZGENE, UniProtKB/TrEMBL