Sec22b (SEC22 homolog B, vesicle trafficking protein) - Rat Genome Database

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Gene: Sec22b (SEC22 homolog B, vesicle trafficking protein) Heterocephalus glaber
Analyze
Symbol: Sec22b
Name: SEC22 homolog B, vesicle trafficking protein
RGD ID: 18920792
Description: ENCODES a protein that exhibits syntaxin binding (ortholog); INVOLVED IN negative regulation of autophagosome assembly (ortholog); positive regulation of protein catabolic process (ortholog); vesicle-mediated transport (ortholog); FOUND IN COPI-coated vesicle (ortholog); SNARE complex (ortholog); synaptic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Vesicle-trafficking protein SEC22b
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477215,803,369 - 15,833,968 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477215,800,793 - 15,833,453 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Sec22b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477215,803,369 - 15,833,968 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477215,800,793 - 15,833,453 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SEC22B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381120,150,898 - 120,176,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1120,150,898 - 120,176,520 (-)EnsemblGRCh38hg38GRCh38
GRCh371120,693,460 - 120,697,156 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361143,807,764 - 143,828,279 (+)NCBINCBI36Build 36hg18NCBI36
Build 341142,585,471 - 142,606,033NCBI
Cytogenetic Map1p12NCBI
CHM1_11120,814,032 - 120,834,611 (-)NCBICHM1_1
T2T-CHM13v2.01120,164,165 - 120,189,787 (-)NCBIT2T-CHM13v2.0
Sec22b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39397,808,543 - 97,829,634 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl397,808,506 - 97,830,592 (+)EnsemblGRCm39 Ensembl
GRCm38397,901,227 - 97,922,318 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl397,901,190 - 97,923,276 (+)EnsemblGRCm38mm10GRCm38
MGSCv37397,705,150 - 97,726,241 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36397,986,632 - 98,007,723 (+)NCBIMGSCv36mm8
Celera399,300,229 - 99,321,320 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map342.35NCBI
Sec22b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82188,188,783 - 188,209,565 (+)NCBIGRCr8
mRatBN7.22185,500,029 - 185,520,811 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2185,500,004 - 185,522,026 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2193,147,655 - 193,169,369 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02190,956,128 - 190,977,833 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02185,780,242 - 185,801,956 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02200,076,079 - 200,096,861 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2200,076,054 - 200,098,076 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02219,551,836 - 219,572,618 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42192,743,195 - 192,763,977 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12192,705,948 - 192,726,731 (+)NCBI
Celera2177,991,104 - 178,011,886 (+)NCBICelera
Cytogenetic Map2q34NCBI
Sec22b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555681,559,452 - 1,587,782 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555681,559,519 - 1,587,782 (+)NCBIChiLan1.0ChiLan1.0
SEC22B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21112,798,509 - 112,819,801 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11112,400,981 - 112,422,292 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0182,383,313 - 82,404,612 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SEC22B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11757,094,038 - 57,115,891 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1757,053,218 - 57,115,886 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1756,732,928 - 56,754,271 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01757,974,306 - 57,996,180 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11756,998,099 - 57,020,005 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01757,034,820 - 57,056,678 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01757,682,634 - 57,704,489 (-)NCBIUU_Cfam_GSD_1.0
Sec22b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050582,791,486 - 2,844,458 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936872294,066 - 313,293 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936872294,116 - 313,893 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC22B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4100,880,937 - 100,905,993 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14100,880,843 - 100,900,942 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24110,848,659 - 110,868,687 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEC22B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12013,602,852 - 13,624,483 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2013,602,870 - 13,622,650 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603816,237,498 - 16,259,142 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000023156   ⟹   ENSHGLP00000022942
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477215,803,369 - 15,833,968 (-)Ensembl
RefSeq Acc Id: XM_004853857   ⟹   XP_004853914
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477215,800,793 - 15,833,453 (-)NCBI
RefSeq Acc Id: XM_004853858   ⟹   XP_004853915
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477215,800,793 - 15,833,350 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004853914 (Get FASTA)   NCBI Sequence Viewer  
  XP_004853915 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB01226 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022942
  ENSHGLP00100012681
GenBank Protein JAO02874 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004853914   ⟸   XM_004853857
- UniProtKB: A0A0P6JGG9 (UniProtKB/TrEMBL),   G5AW15 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004853915   ⟸   XM_004853858
- UniProtKB: A0A0P6JGG9 (UniProtKB/TrEMBL),   G5AW15 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000022942   ⟸   ENSHGLT00000023156


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016365 Ensembl, ENTREZGENE
  ENSHGLG00100009390 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000023156 ENTREZGENE
  ENSHGLT00100012826 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
  Longin domain UniProtKB/TrEMBL
InterPro Longin-like_dom_sf UniProtKB/TrEMBL
  Longin_dom UniProtKB/TrEMBL
  Sec22 UniProtKB/TrEMBL
  Synaptobrevin UniProtKB/TrEMBL
  V_SNARE_CC UniProtKB/TrEMBL
KEGG Report hgl:101713361 UniProtKB/TrEMBL
NCBI Gene Sec22b ENTREZGENE
PANTHER PTHR45837 UniProtKB/TrEMBL
  VESICLE-TRAFFICKING PROTEIN SEC22B UniProtKB/TrEMBL
Pfam Longin UniProtKB/TrEMBL
  Synaptobrevin UniProtKB/TrEMBL
PRINTS SYNAPTOBREVN UniProtKB/TrEMBL
PROSITE LONGIN UniProtKB/TrEMBL
  V_SNARE UniProtKB/TrEMBL
SMART Longin UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
  SSF64356 UniProtKB/TrEMBL
UniProt A0A0P6JGG9 ENTREZGENE, UniProtKB/TrEMBL
  G5AW15 ENTREZGENE, UniProtKB/TrEMBL