Hnrnpa0 (heterogeneous nuclear ribonucleoprotein A0)

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Gene: Hnrnpa0 (heterogeneous nuclear ribonucleoprotein A0) Heterocephalus glaber

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Symbol:

Hnrnpa0

Name:

heterogeneous nuclear ribonucleoprotein A0

RGD ID:

18920575

Description:

ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); protein kinase binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA stabilization (ortholog); inflammatory response (ortholog); response to lipopolysaccharide (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH gastric adenocarcinoma (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Alliance Genes

More Info

more info ...

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624733	9,265,784 - 9,271,559 (+)	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastric adenocarcinoma (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

3'-UTR-mediated mRNA stabilization (ISO)

inflammatory response (ISO)

response to lipopolysaccharide (ISO)

Cellular Component

nucleoplasm (ISO)

Molecular Function

mRNA 3'-UTR AU-rich region binding (ISO)

protein kinase binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (ISO)

References

Genomics

Comparative Map Data

Hnrnpa0
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624733	9,265,784 - 9,271,559 (+)	NCBI

HNRNPA0
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	5	137,745,651 - 137,754,363 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	5	137,745,651 - 137,754,363 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	5	137,087,073 - 137,090,039 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	137,114,972 - 137,117,938 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	5	137,114,973 - 137,117,938	NCBI
Celera	5	133,208,508 - 133,211,474 (-)	NCBI
Cytogenetic Map	5	q31.2	NCBI
HuRef	5	132,277,733 - 132,280,699 (-)	NCBI		HuRef
CHM1_1	5	136,519,671 - 136,522,637 (-)	NCBI		CHM1_1

Hnrnpa0
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	58,273,693 - 58,276,370 (-)	NCBI	GRCm39		mm39
GRCm38	13	58,125,879 - 58,128,556 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	58,125,879 - 58,128,556 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	58,227,240 - 58,229,917 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	13	58,135,497 - 58,138,179 (-)	NCBI			mm8
Celera	13	59,188,312 - 59,191,005 (-)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI

Hnrnpa0
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
RGSC_v3.4	17	12,452,030 - 12,452,914 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	17	6,617,417 - 6,618,097 (+)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

Hnrnpa0
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955408	32,718,736 - 32,719,409 (-)	NCBI	ChiLan1.0	ChiLan1.0

HNRNPA0
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	5	139,275,249 - 139,278,250 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	139,277,004 - 139,277,939 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	5	133,132,030 - 133,140,771 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

HNRNPA0
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	11	25,466,185 - 25,467,117 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	11	25,464,601 - 25,467,460 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Hnrnpa0
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936597	4,712,201 - 4,714,949 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HNRNPA0
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	139,779,867 - 139,783,159 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	139,779,865 - 139,783,016 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	145,501,462 - 145,504,543 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HNRNPA0
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	40,433,429 - 40,436,188 (-)	NCBI
ChlSab1.1 Ensembl	23	40,435,002 - 40,435,913 (-)	Ensembl

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_004836193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01008002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

XM_004836193 ⟹ XP_004836250

RefSeq Status:

Type:

CODING

Position:

Molerat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624733	9,265,784 - 9,271,559 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_004836250	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_004836250 ⟸ XM_004836193

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Hnrnpa0	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations