Banf2 (BANF family member 2) - Rat Genome Database

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Gene: Banf2 (BANF family member 2) Heterocephalus glaber
Analyze
Symbol: Banf2
Name: BANF family member 2 (Ensembl:barrier to autointegration factor 2)
RGD ID: 18920566
Description: ENCODES a protein that exhibits identical protein binding (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: barrier to autointegration factor 2; Barrier-to-autointegration factor-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474118,829,728 - 18,856,058 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474118,823,945 - 18,855,980 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Banf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474118,829,728 - 18,856,058 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474118,823,945 - 18,855,980 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BANF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382017,693,672 - 17,735,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2017,693,672 - 17,735,871 (+)EnsemblGRCh38hg38GRCh38
GRCh372017,674,317 - 17,716,516 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362017,628,593 - 17,664,517 (+)NCBINCBI36Build 36hg18NCBI36
Build 342017,651,360 - 17,664,516NCBI
Celera2017,748,830 - 17,791,025 (+)NCBICelera
Cytogenetic Map20p12.1NCBI
HuRef2017,637,253 - 17,679,477 (+)NCBIHuRef
CHM1_12017,674,336 - 17,716,504 (+)NCBICHM1_1
T2T-CHM13v2.02017,744,826 - 17,787,013 (+)NCBIT2T-CHM13v2.0
Banf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392143,875,022 - 143,915,899 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2143,874,979 - 143,915,899 (+)EnsemblGRCm39 Ensembl
GRCm382144,033,102 - 144,073,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2144,033,059 - 144,073,979 (+)EnsemblGRCm38mm10GRCm38
MGSCv372143,858,838 - 143,899,715 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362143,724,543 - 143,765,418 (+)NCBIMGSCv36mm8
Celera2145,216,577 - 145,258,284 (+)NCBICelera
Cytogenetic Map2G1NCBI
cM Map270.91NCBI
Banf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83151,841,506 - 151,896,205 (+)NCBIGRCr8
mRatBN7.23131,387,107 - 131,442,837 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3131,388,130 - 131,442,832 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03138,128,123 - 138,183,750 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3138,174,054 - 138,183,696 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03144,566,387 - 144,622,101 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43132,584,846 - 132,598,440 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13132,490,409 - 132,504,011 (+)NCBI
Celera3130,285,865 - 130,331,321 (+)NCBICelera
Cytogenetic Map3q41NCBI
Banf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541526,679,578 - 26,696,852 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541526,671,039 - 26,692,478 (+)NCBIChiLan1.0ChiLan1.0
BANF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22118,567,219 - 18,632,802 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12018,564,045 - 18,624,631 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02017,658,087 - 17,697,839 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12017,636,394 - 17,675,510 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2017,630,163 - 17,675,510 (+)Ensemblpanpan1.1panPan2
BANF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1245,274,524 - 5,308,606 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl245,274,553 - 5,307,433 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha245,207,372 - 5,241,455 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0245,683,035 - 5,716,921 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl245,682,092 - 5,691,527 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1245,296,356 - 5,330,231 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0245,390,322 - 5,424,181 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0245,665,990 - 5,699,881 (-)NCBIUU_Cfam_GSD_1.0
Banf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640153,944,193 - 153,982,633 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364852,375,509 - 2,385,384 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364852,375,595 - 2,385,384 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BANF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1726,131,001 - 26,176,393 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11726,138,520 - 26,175,665 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21729,542,732 - 29,580,199 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BANF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1246,764,028 - 46,800,194 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl246,789,079 - 46,800,132 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660781,431,855 - 1,468,382 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000021555   ⟹   ENSHGLP00000021347
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474118,829,728 - 18,856,058 (+)Ensembl
RefSeq Acc Id: XM_004840858   ⟹   XP_004840915
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474118,830,126 - 18,855,980 (+)NCBI
RefSeq Acc Id: XM_021254858   ⟹   XP_021110517
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474118,823,945 - 18,847,389 (+)NCBI
RefSeq Acc Id: XM_021254859   ⟹   XP_021110518
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474118,830,126 - 18,847,389 (+)NCBI
RefSeq Acc Id: XM_021254860   ⟹   XP_021110519
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474118,823,945 - 18,855,980 (+)NCBI
RefSeq Acc Id: XM_021254861   ⟹   XP_021110520
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474118,830,138 - 18,855,980 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021110519   ⟸   XM_021254860
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021110517   ⟸   XM_021254858
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004840915   ⟸   XM_004840858
- Peptide Label: isoform X4
- UniProtKB: G5CBA2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110518   ⟸   XM_021254859
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021110520   ⟸   XM_021254861
- Peptide Label: isoform X4
- UniProtKB: G5CBA2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000021347   ⟸   ENSHGLT00000021555


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015254 Ensembl, ENTREZGENE
  ENSHGLG00100008432 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000021555 ENTREZGENE
  ENSHGLT00100011480 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.40 UniProtKB/TrEMBL
InterPro BAF_prot UniProtKB/TrEMBL
  BAF_sf UniProtKB/TrEMBL
KEGG Report hgl:101713046 UniProtKB/TrEMBL
NCBI Gene Banf2 ENTREZGENE
PANTHER BARRIER TO AUTOINTEGRATION FACTOR 2 UniProtKB/TrEMBL
  BARRIER-TO-AUTOINTEGRATION FACTOR-LIKE PROTEIN UniProtKB/TrEMBL
Pfam BAF UniProtKB/TrEMBL
SMART BAF UniProtKB/TrEMBL
Superfamily-SCOP SSF47798 UniProtKB/TrEMBL
UniProt G5CBA2 ENTREZGENE, UniProtKB/TrEMBL