Ppp1r42 (protein phosphatase 1 regulatory subunit 42) - Rat Genome Database

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Gene: Ppp1r42 (protein phosphatase 1 regulatory subunit 42) Heterocephalus glaber
Analyze
Symbol: Ppp1r42
Name: protein phosphatase 1 regulatory subunit 42
RGD ID: 18920558
Description: ENCODES a protein that exhibits actin binding (ortholog); dynein complex binding (ortholog); tubulin binding (ortholog); ASSOCIATED WITH genetic disease (ortholog); Joubert syndrome 21 (ortholog); FOUND IN manchette (ortholog); microtubule cytoskeleton (ortholog); microtubule organizing center (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474424,336,145 - 24,379,811 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474424,331,557 - 24,371,988 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ppp1r42
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474424,336,145 - 24,379,811 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474424,331,557 - 24,371,988 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PPP1R42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38866,964,103 - 67,028,554 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl866,964,099 - 67,056,604 (-)EnsemblGRCh38hg38GRCh38
GRCh37867,876,338 - 67,940,789 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36868,062,920 - 68,103,340 (-)NCBINCBI36Build 36hg18NCBI36
Celera863,893,786 - 63,934,229 (-)NCBICelera
Cytogenetic Map8q13.1NCBI
HuRef863,393,125 - 63,433,545 (-)NCBIHuRef
CHM1_1867,955,410 - 67,995,835 (-)NCBICHM1_1
T2T-CHM13v2.0867,390,584 - 67,455,035 (-)NCBIT2T-CHM13v2.0
Ppp1r42
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39110,038,847 - 10,083,766 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl110,038,849 - 10,079,361 (-)EnsemblGRCm39 Ensembl
GRCm3819,968,622 - 10,013,541 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl19,968,624 - 10,009,136 (-)EnsemblGRCm38mm10GRCm38
MGSCv3719,958,705 - 9,999,211 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3619,953,838 - 9,994,344 (-)NCBIMGSCv36mm8
Celera19,942,800 - 9,983,315 (-)NCBICelera
Cytogenetic Map1A2NCBI
cM Map12.25NCBI
Ppp1r42
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8514,009,972 - 14,057,330 (+)NCBIGRCr8
mRatBN7.259,227,109 - 9,274,461 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl59,227,204 - 9,274,453 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx511,379,422 - 11,430,891 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0513,006,578 - 13,060,838 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0512,714,074 - 12,765,558 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.058,911,356 - 8,956,313 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl58,916,633 - 8,956,119 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0513,718,715 - 13,763,672 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.458,773,373 - 8,818,333 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera58,740,514 - 8,787,374 (+)NCBICelera
Cytogenetic Map5q11NCBI
Ppp1r42
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544412,259,941 - 12,308,911 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544412,255,381 - 12,294,605 (+)NCBIChiLan1.0ChiLan1.0
PPP1R42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2782,701,653 - 82,769,756 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1858,343,914 - 58,412,017 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0863,507,439 - 63,572,137 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1865,193,802 - 65,233,450 (-)NCBIpanpan1.1PanPan1.1panPan2
PPP1R42
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12916,507,235 - 16,549,210 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2916,492,392 - 16,549,320 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2916,799,958 - 16,865,364 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02916,588,125 - 16,630,441 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2916,580,978 - 16,630,181 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12916,620,104 - 16,661,985 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02916,696,676 - 16,762,177 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02916,953,032 - 17,018,688 (-)NCBIUU_Cfam_GSD_1.0
Ppp1r42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530367,672,550 - 67,722,170 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364967,063,304 - 7,106,130 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364967,063,335 - 7,112,890 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R42
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl467,772,806 - 67,816,230 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1467,771,755 - 67,816,392 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2473,833,186 - 73,875,554 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPP1R42
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1862,823,763 - 62,891,976 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603978,624,276 - 78,679,408 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000011973   ⟹   ENSHGLP00000011844
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474424,336,145 - 24,379,811 (+)Ensembl
RefSeq Acc Id: XM_004842093   ⟹   XP_004842150
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474424,331,557 - 24,371,988 (+)NCBI
RefSeq Acc Id: XM_021256059   ⟹   XP_021111718
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474424,331,562 - 24,371,988 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004842150 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111718 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004842150   ⟸   XM_004842093
- UniProtKB: G5AQN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111718   ⟸   XM_021256059
- UniProtKB: G5AQN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000011844   ⟸   ENSHGLT00000011973


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008475 Ensembl
Gene3D-CATH Ribonuclease Inhibitor UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_4 UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene Ppp1r42 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED UniProtKB/TrEMBL
  PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 42 UniProtKB/TrEMBL
Pfam LRR_4 UniProtKB/TrEMBL
  LRR_9 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_SD22 UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt G5AQN2 ENTREZGENE, UniProtKB/TrEMBL