Tmem41a (transmembrane protein 41A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Tmem41a (transmembrane protein 41A) Heterocephalus glaber
Analyze
Symbol: Tmem41a
Name: transmembrane protein 41A
RGD ID: 18920531
Description: ASSOCIATED WITH Currarino syndrome (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473071,151,628 - 71,158,426 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473071,151,606 - 71,158,432 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Tmem41a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473071,151,628 - 71,158,426 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473071,151,606 - 71,158,432 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TMEM41A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383185,489,601 - 185,499,035 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3185,476,496 - 185,499,057 (-)EnsemblGRCh38hg38GRCh38
GRCh373185,207,389 - 185,216,823 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363186,691,478 - 186,699,496 (-)NCBINCBI36Build 36hg18NCBI36
Build 343186,691,497 - 186,699,504NCBI
Celera3183,652,912 - 183,662,367 (-)NCBICelera
Cytogenetic Map3q27.2NCBI
HuRef3182,616,986 - 182,626,443 (-)NCBIHuRef
CHM1_13185,170,397 - 185,179,856 (-)NCBICHM1_1
T2T-CHM13v2.03188,305,359 - 188,314,797 (-)NCBIT2T-CHM13v2.0
Tmem41a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391621,753,077 - 21,766,302 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1621,753,076 - 21,766,302 (-)EnsemblGRCm39 Ensembl
GRCm381621,934,327 - 21,947,552 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1621,934,326 - 21,947,552 (-)EnsemblGRCm38mm10GRCm38
MGSCv371621,934,400 - 21,947,617 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361621,848,310 - 21,860,209 (-)NCBIMGSCv36mm8
Celera1622,501,349 - 22,514,355 (-)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1612.94NCBI
Tmem41a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81192,588,497 - 92,595,105 (+)NCBIGRCr8
mRatBN7.21179,084,005 - 79,090,613 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1179,084,001 - 79,090,613 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1187,817,926 - 87,825,757 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01180,471,570 - 80,479,401 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01179,532,269 - 79,540,100 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01182,734,525 - 82,741,177 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1182,734,613 - 82,741,428 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01185,817,837 - 85,824,489 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1177,942,817 - 77,949,426 (+)NCBICelera
Cytogenetic Map11q23NCBI
Tmem41a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542022,053,110 - 22,061,211 (+)NCBIChiLan1.0ChiLan1.0
TMEM41A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22183,364,563 - 183,373,997 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13183,369,279 - 183,378,659 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03182,524,432 - 182,533,871 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13190,993,465 - 191,009,960 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3191,000,408 - 191,009,929 (-)Ensemblpanpan1.1panPan2
TMEM41A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13418,253,302 - 18,261,915 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3418,254,902 - 18,262,259 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3422,339,029 - 22,347,642 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03418,162,906 - 18,171,509 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3418,162,907 - 18,171,555 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13418,198,577 - 18,207,178 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03418,194,484 - 18,203,094 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03418,424,280 - 18,432,894 (-)NCBIUU_Cfam_GSD_1.0
Tmem41a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602118,264,187 - 118,271,005 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365784,356,035 - 4,363,218 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365784,356,035 - 4,363,252 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM41A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13123,356,438 - 123,365,209 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113123,356,438 - 123,365,206 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213132,907,672 - 132,913,626 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM41A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1153,930,394 - 3,940,692 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl153,930,996 - 3,938,737 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606312,692,236 - 12,709,245 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027238   ⟹   ENSHGLP00000026999
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473071,151,628 - 71,158,426 (+)Ensembl
RefSeq Acc Id: XM_004834841   ⟹   XP_004834898
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473071,151,606 - 71,158,432 (+)NCBI
RefSeq Acc Id: XM_004834842   ⟹   XP_004834899
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473071,151,606 - 71,158,432 (+)NCBI
RefSeq Acc Id: XR_204742
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473071,151,606 - 71,158,432 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004834898 (Get FASTA)   NCBI Sequence Viewer  
  XP_004834899 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB12522 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026999
GenBank Protein JAN98013 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004834898   ⟸   XM_004834841
- Peptide Label: isoform X1
- UniProtKB: A0A0N8ET18 (UniProtKB/TrEMBL),   G5BTA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004834899   ⟸   XM_004834842
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000026999   ⟸   ENSHGLT00000027238


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019199 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027238 ENTREZGENE
InterPro SNARE_assoc UniProtKB/TrEMBL
  TM41A/B UniProtKB/TrEMBL
KEGG Report hgl:101698126 UniProtKB/TrEMBL
NCBI Gene Tmem41a ENTREZGENE
PANTHER PTHR43220 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 41A UniProtKB/TrEMBL
Pfam SNARE_assoc UniProtKB/TrEMBL
UniProt A0A0N8ET18 ENTREZGENE, UniProtKB/TrEMBL
  G5BTA0 ENTREZGENE, UniProtKB/TrEMBL