Grip1 (glutamate receptor interacting protein 1) - Rat Genome Database

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Gene: Grip1 (glutamate receptor interacting protein 1) Heterocephalus glaber
Analyze
Symbol: Grip1
Name: glutamate receptor interacting protein 1
RGD ID: 18920432
Description: ENCODES a protein that exhibits GTPase binding (ortholog); ionotropic glutamate receptor binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN cellular response to brain-derived neurotrophic factor stimulus (ortholog); cellular response to phorbol 13-acetate 12-myristate (ortholog); cerebral cortex development (ortholog); ASSOCIATED WITH clubfoot (ortholog); Fraser syndrome (ortholog); Fraser syndrome 1 (ortholog); FOUND IN dendrite (ortholog); dendritic shaft (ortholog); dendritic spine (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glutamate receptor-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248021,264,833 - 1,964,202 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248021,558,364 - 1,954,695 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Grip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248021,264,833 - 1,964,202 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248021,558,364 - 1,954,695 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GRIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381266,347,431 - 67,069,338 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1266,347,431 - 67,069,162 (-)EnsemblGRCh38hg38GRCh38
GRCh371266,741,211 - 67,463,118 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361265,029,066 - 65,359,020 (-)NCBINCBI36Build 36hg18NCBI36
Build 341265,028,871 - 65,145,401NCBI
Celera1266,405,432 - 66,737,052 (-)NCBICelera
Cytogenetic Map12q14.3NCBI
HuRef1263,792,018 - 64,123,720 (-)NCBIHuRef
CHM1_11266,708,221 - 67,039,968 (-)NCBICHM1_1
T2T-CHM13v2.01266,326,883 - 67,048,770 (-)NCBIT2T-CHM13v2.0
Grip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910119,289,810 - 119,923,172 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10119,289,735 - 119,923,166 (+)EnsemblGRCm39 Ensembl
GRCm3810119,453,238 - 120,087,267 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10119,453,830 - 120,087,261 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710118,891,370 - 119,512,653 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610118,857,374 - 119,478,657 (+)NCBIMGSCv36mm8
Celera10121,814,033 - 122,436,941 (+)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1067.33NCBI
Grip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8756,820,501 - 57,477,877 (+)NCBIGRCr8
mRatBN7.2754,934,856 - 55,592,274 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl754,934,250 - 55,592,273 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx757,218,667 - 57,489,247 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0759,421,818 - 59,692,413 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0759,199,652 - 59,469,780 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0764,672,723 - 64,854,939 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl764,672,722 - 64,864,404 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0764,890,319 - 65,072,097 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4759,157,276 - 59,306,131 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1759,170,845 - 59,326,858 (+)NCBI
Celera752,073,046 - 52,340,208 (+)NCBICelera
Cytogenetic Map7q22NCBI
Grip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545812,967,089 - 13,214,838 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545812,970,858 - 13,179,369 (-)NCBIChiLan1.0ChiLan1.0
GRIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21027,286,061 - 28,012,479 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11227,282,825 - 28,004,487 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01221,841,611 - 22,562,418 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11222,826,257 - 23,069,480 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1222,744,177 - 23,069,480 (+)Ensemblpanpan1.1panPan2
GRIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1108,801,023 - 9,187,684 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl108,802,529 - 9,063,848 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha108,731,329 - 9,389,361 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0108,912,752 - 9,572,589 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl108,914,210 - 9,176,615 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1108,789,226 - 9,449,620 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0109,034,586 - 9,695,263 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0109,155,858 - 9,816,627 (-)NCBIUU_Cfam_GSD_1.0
Grip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494549,107,221 - 49,757,054 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365454,353,040 - 5,002,725 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365454,353,056 - 4,606,196 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl530,697,040 - 31,020,901 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1530,697,018 - 31,175,412 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2533,972,164 - 34,714,229 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GRIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11162,018,037 - 62,464,440 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1162,015,463 - 62,335,876 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037182,985,387 - 183,705,463 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004861094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01070947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01070948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01070949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01070950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01070951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01070952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01070953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01070954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01070955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01070956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01070957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01070958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01070959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01070960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01004327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000019506   ⟹   ENSHGLP00000019315
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248021,264,833 - 1,964,202 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019507   ⟹   ENSHGLP00000019316
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248021,264,833 - 1,953,173 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019508   ⟹   ENSHGLP00000019317
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248021,686,758 - 1,953,173 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019509   ⟹   ENSHGLP00000019318
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248021,686,758 - 1,953,173 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019510   ⟹   ENSHGLP00000019319
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248021,686,758 - 1,953,173 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019511   ⟹   ENSHGLP00000019320
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248021,767,103 - 1,956,021 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019512   ⟹   ENSHGLP00000019321
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248021,767,103 - 1,956,021 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019513   ⟹   ENSHGLP00000019322
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248021,872,490 - 1,953,173 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019514   ⟹   ENSHGLP00000019323
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248021,872,490 - 1,953,173 (+)Ensembl
RefSeq Acc Id: XM_004861094   ⟹   XP_004861151
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248021,558,364 - 1,954,695 (+)NCBI
RefSeq Acc Id: XM_021241550   ⟹   XP_021097209
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248021,558,364 - 1,954,695 (+)NCBI
RefSeq Acc Id: XM_021241551   ⟹   XP_021097210
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248021,558,364 - 1,954,695 (+)NCBI
RefSeq Acc Id: XM_021241552   ⟹   XP_021097211
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248021,558,364 - 1,954,695 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004861151 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097209 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097210 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097211 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019318
  ENSHGLP00000019320
  ENSHGLP00000019321
GenBank Protein JAN99305 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004861151   ⟸   XM_004861094
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JF71 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097210   ⟸   XM_021241551
- Peptide Label: isoform X3
- UniProtKB: A0A0P6JF71 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097209   ⟸   XM_021241550
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JF71 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097211   ⟸   XM_021241552
- Peptide Label: isoform X4
- UniProtKB: A0A0P6JF71 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000019316   ⟸   ENSHGLT00000019507
RefSeq Acc Id: ENSHGLP00000019315   ⟸   ENSHGLT00000019506
RefSeq Acc Id: ENSHGLP00000019320   ⟸   ENSHGLT00000019511
RefSeq Acc Id: ENSHGLP00000019321   ⟸   ENSHGLT00000019512
RefSeq Acc Id: ENSHGLP00000019323   ⟸   ENSHGLT00000019514
RefSeq Acc Id: ENSHGLP00000019319   ⟸   ENSHGLT00000019510
RefSeq Acc Id: ENSHGLP00000019322   ⟸   ENSHGLT00000019513
RefSeq Acc Id: ENSHGLP00000019317   ⟸   ENSHGLT00000019508
RefSeq Acc Id: ENSHGLP00000019318   ⟸   ENSHGLT00000019509


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013837 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019509 ENTREZGENE
  ENSHGLT00000019511 ENTREZGENE
  ENSHGLT00000019512 ENTREZGENE
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
InterPro GRIP1/2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_6 UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
NCBI Gene Grip1 ENTREZGENE
PANTHER PTHR46227 UniProtKB/TrEMBL
  PTHR46227:SF3 UniProtKB/TrEMBL
Pfam PDZ UniProtKB/TrEMBL
  PDZ_6 UniProtKB/TrEMBL
PROSITE PDZ UniProtKB/TrEMBL
SMART PDZ UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/TrEMBL
UniProt A0A0P6JF71 ENTREZGENE, UniProtKB/TrEMBL