Rab6b (RAB6B, member RAS oncogene family) - Rat Genome Database

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Gene: Rab6b (RAB6B, member RAS oncogene family) Heterocephalus glaber
Analyze
Symbol: Rab6b
Name: RAB6B, member RAS oncogene family
RGD ID: 18920367
Description: ENCODES a protein that exhibits myosin V binding (ortholog); INVOLVED IN Golgi organization (ortholog); protein localization to Golgi membrane (ortholog); ASSOCIATED WITH Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); presynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-6B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473010,133,949 - 10,197,551 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473010,134,215 - 10,197,534 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Rab6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473010,133,949 - 10,197,551 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473010,134,215 - 10,197,534 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RAB6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,824,235 - 133,895,882 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,824,235 - 133,895,882 (-)EnsemblGRCh38hg38GRCh38
GRCh373133,543,079 - 133,614,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,025,769 - 135,097,381 (-)NCBINCBI36Build 36hg18NCBI36
Build 343135,025,784 - 135,097,137NCBI
Celera3131,968,881 - 132,040,477 (-)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3130,921,268 - 130,992,822 (-)NCBIHuRef
CHM1_13133,507,024 - 133,578,520 (-)NCBICHM1_1
T2T-CHM13v2.03136,569,430 - 136,641,051 (-)NCBIT2T-CHM13v2.0
Rab6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399102,988,866 - 103,062,475 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9102,988,986 - 103,062,475 (+)EnsemblGRCm39 Ensembl
GRCm389103,111,667 - 103,185,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,111,787 - 103,185,276 (+)EnsemblGRCm38mm10GRCm38
MGSCv379103,014,404 - 103,087,600 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369102,970,224 - 103,043,420 (+)NCBIMGSCv36mm8
Celera9102,662,484 - 102,735,933 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map954.88NCBI
Rab6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,574,223 - 112,642,911 (+)NCBIGRCr8
mRatBN7.28103,695,328 - 103,764,023 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,695,631 - 103,805,732 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8109,354,470 - 109,423,481 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,553,634 - 107,622,649 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,396,318 - 105,465,325 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,600,375 - 111,668,817 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,600,532 - 111,668,808 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08110,991,008 - 111,059,794 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,151,061 - 108,192,013 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18108,124,726 - 108,209,832 (+)NCBI
Celera8103,101,314 - 103,142,215 (+)NCBICelera
Cytogenetic Map8q32NCBI
Rab6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,732,616 - 4,781,094 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555014,751,647 - 4,781,094 (+)NCBIChiLan1.0ChiLan1.0
RAB6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22131,748,402 - 131,820,183 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13131,753,131 - 131,824,912 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,869,494 - 130,941,280 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13138,344,807 - 138,416,358 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3138,344,815 - 138,416,358 (-)Ensemblpanpan1.1panPan2
RAB6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12330,714,723 - 30,754,765 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2330,717,062 - 30,749,188 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2330,693,860 - 30,754,169 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02331,235,166 - 31,295,933 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2331,235,171 - 31,295,965 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12330,931,304 - 30,989,279 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02330,986,735 - 31,047,041 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02331,234,354 - 31,294,724 (-)NCBIUU_Cfam_GSD_1.0
Rab6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,209,010 - 70,271,228 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365296,969,284 - 7,031,918 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365296,969,507 - 7,031,733 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1375,012,268 - 75,075,239 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11375,012,267 - 75,075,324 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21382,510,690 - 82,573,714 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,472,615 - 56,541,083 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,472,634 - 56,541,434 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604129,455,217 - 29,523,670 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000023902   ⟹   ENSHGLP00000023684
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473010,133,949 - 10,197,551 (-)Ensembl
RefSeq Acc Id: XM_004834258   ⟹   XP_004834315
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473010,134,215 - 10,197,534 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004834315 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000023684
  ENSHGLP00100050969
GenBank Protein JAO02368 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004834315   ⟸   XM_004834258
- UniProtKB: A0A0P6JH16 (UniProtKB/TrEMBL),   G5BQA7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000023684   ⟸   ENSHGLT00000023902


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016898 Ensembl, ENTREZGENE
  ENSHGLG00100052217 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000023902 ENTREZGENE
  ENSHGLT00100058902 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report hgl:101720322 UniProtKB/TrEMBL
NCBI Gene Rab6b ENTREZGENE
PANTHER RAS-RELATED PROTEIN RAB UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-6B UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0P6JH16 ENTREZGENE, UniProtKB/TrEMBL
  G5BQA7 ENTREZGENE, UniProtKB/TrEMBL