Bves (blood vessel epicardial substance) - Rat Genome Database

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Gene: Bves (blood vessel epicardial substance) Heterocephalus glaber
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Symbol: Bves
Name: blood vessel epicardial substance
RGD ID: 18920355
Description: ENCODES a protein that exhibits structural molecule activity (ortholog); INVOLVED IN cell migration involved in heart development (ortholog); epithelial cell-cell adhesion (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2X (ortholog); genetic disease (ortholog); limb-girdle muscular dystrophy (ortholog); FOUND IN caveola (ortholog); cell junction (ortholog); cell projection membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624952323,475 - 360,805 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624952326,812 - 360,790 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Bves
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624952323,475 - 360,805 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624952326,812 - 360,790 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BVES
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386105,096,822 - 105,137,157 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6105,096,822 - 105,137,157 (-)EnsemblGRCh38hg38GRCh38
GRCh376105,544,697 - 105,585,032 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366105,651,390 - 105,691,236 (-)NCBINCBI36Build 36hg18NCBI36
Build 346105,651,393 - 105,690,914NCBI
Celera6106,167,189 - 106,206,693 (-)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6102,987,978 - 103,028,002 (-)NCBIHuRef
CHM1_16105,806,724 - 105,846,753 (-)NCBICHM1_1
T2T-CHM13v2.06106,272,906 - 106,312,920 (-)NCBIT2T-CHM13v2.0
Bves
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391045,211,783 - 45,248,580 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1045,211,868 - 45,248,575 (+)EnsemblGRCm39 Ensembl
GRCm381045,335,735 - 45,372,484 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1045,335,772 - 45,372,479 (+)EnsemblGRCm38mm10GRCm38
MGSCv371045,055,568 - 45,089,514 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361045,024,177 - 45,058,123 (+)NCBIMGSCv36mm8
Celera1046,209,822 - 46,242,144 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1023.47NCBI
Bves
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82050,401,611 - 50,442,653 (+)NCBIGRCr8
mRatBN7.22048,819,241 - 48,860,282 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2048,822,308 - 48,857,472 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2050,565,097 - 50,600,096 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02050,214,848 - 50,249,847 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02050,899,187 - 50,934,183 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02050,439,885 - 50,474,678 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2050,439,883 - 50,474,678 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02052,052,628 - 52,086,539 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42049,671,174 - 49,671,683 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2051,164,981 - 51,200,377 (-)NCBICelera
Cytogenetic Map20q13NCBI
Bves
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541130,517,875 - 30,551,335 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541130,517,917 - 30,548,424 (-)NCBIChiLan1.0ChiLan1.0
BVES
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25125,111,875 - 125,156,846 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16122,998,350 - 123,043,287 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06102,915,148 - 102,951,141 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16106,784,465 - 106,822,050 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6106,787,615 - 106,822,050 (-)Ensemblpanpan1.1panPan2
BVES
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11262,542,274 - 62,581,110 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1262,545,666 - 62,579,548 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1262,331,453 - 62,369,673 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01263,393,637 - 63,432,405 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1263,393,639 - 63,432,655 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11262,748,894 - 62,787,110 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01262,590,058 - 62,628,349 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01262,868,831 - 62,907,346 (-)NCBIUU_Cfam_GSD_1.0
Bves
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494697,512,420 - 97,548,660 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365641,788,317 - 1,823,084 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365641,791,733 - 1,823,421 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BVES
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl171,314,274 - 71,360,175 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1171,316,354 - 71,360,255 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2180,636,881 - 80,681,079 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BVES
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11368,668,248 - 68,704,661 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1368,668,321 - 68,707,885 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604041,016,271 - 41,055,600 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000003438   ⟹   ENSHGLP00000003383
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624952323,475 - 360,805 (-)Ensembl
RefSeq Acc Id: XM_004875073   ⟹   XP_004875130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624952326,812 - 360,790 (-)NCBI
RefSeq Acc Id: XM_004875075   ⟹   XP_004875132
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624952326,812 - 359,958 (-)NCBI
RefSeq Acc Id: XM_013069397   ⟹   XP_012924851
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624952326,812 - 360,329 (-)NCBI
RefSeq Acc Id: XM_021252383   ⟹   XP_021108042
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624952326,812 - 358,894 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004875130 (Get FASTA)   NCBI Sequence Viewer  
  XP_004875132 (Get FASTA)   NCBI Sequence Viewer  
  XP_012924851 (Get FASTA)   NCBI Sequence Viewer  
  XP_021108042 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB01342 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003383
  ENSHGLP00000060481
  ENSHGLP00100051068
GenBank Protein JAO02962 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004875130   ⟸   XM_004875073
- Peptide Label: isoform X1
RefSeq Acc Id: XP_012924851   ⟸   XM_013069397
- Peptide Label: isoform X3
- UniProtKB: G5AWD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004875132   ⟸   XM_004875075
- Peptide Label: isoform X3
- UniProtKB: G5AWD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021108042   ⟸   XM_021252383
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000003383   ⟸   ENSHGLT00000003438


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002498 Ensembl, ENTREZGENE
  ENSHGLG00000032151 UniProtKB/TrEMBL
  ENSHGLG00100039304 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000003438 ENTREZGENE
  ENSHGLT00000048513 UniProtKB/TrEMBL
  ENSHGLT00100051901 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.10 UniProtKB/TrEMBL
InterPro cNMP-bd-like UniProtKB/TrEMBL
  Popeye_prot UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/TrEMBL
NCBI Gene Bves ENTREZGENE
PANTHER BLOOD VESSEL EPICARDIAL SUBSTANCE UniProtKB/TrEMBL
  PTHR12101 UniProtKB/TrEMBL
Pfam Popeye UniProtKB/TrEMBL
Superfamily-SCOP SSF51206 UniProtKB/TrEMBL
UniProt G5AWD1 ENTREZGENE, UniProtKB/TrEMBL