Med6 (mediator complex subunit 6) - Rat Genome Database

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Gene: Med6 (mediator complex subunit 6) Heterocephalus glaber
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Symbol: Med6
Name: mediator complex subunit 6
RGD ID: 18920261
Description: ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); protein ubiquitination (ortholog); somatic stem cell population maintenance (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN core mediator complex (ortholog); ubiquitin ligase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mediator of RNA polymerase II transcription subunit 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473430,604,254 - 30,621,213 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473430,604,314 - 30,621,116 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Med6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473430,604,254 - 30,621,213 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473430,604,314 - 30,621,116 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MED6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381470,583,221 - 70,600,655 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1470,581,257 - 70,600,690 (-)EnsemblGRCh38hg38GRCh38
GRCh371471,049,938 - 71,067,372 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361470,120,710 - 70,137,137 (-)NCBINCBI36Build 36hg18NCBI36
Build 341470,120,709 - 70,137,137NCBI
Celera1451,114,912 - 51,131,341 (-)NCBICelera
Cytogenetic Map14q24.2NCBI
HuRef1451,219,608 - 51,236,039 (-)NCBIHuRef
CHM1_11470,989,144 - 71,005,574 (-)NCBICHM1_1
T2T-CHM13v2.01464,789,242 - 64,806,677 (-)NCBIT2T-CHM13v2.0
Med6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391281,620,331 - 81,641,782 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1281,620,331 - 81,641,782 (-)EnsemblGRCm39 Ensembl
GRCm381281,573,557 - 81,595,008 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1281,573,557 - 81,595,008 (-)EnsemblGRCm38mm10GRCm38
MGSCv371282,674,551 - 82,695,945 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361282,492,412 - 82,513,806 (-)NCBIMGSCv36mm8
Celera1283,040,726 - 83,062,061 (-)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1237.8NCBI
Med6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86107,001,664 - 107,015,130 (-)NCBIGRCr8
mRatBN7.26101,270,410 - 101,283,929 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6101,270,410 - 101,283,876 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6101,419,701 - 101,433,202 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06101,718,892 - 101,732,393 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06101,091,521 - 101,105,008 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06105,302,558 - 105,316,024 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6105,302,558 - 105,316,024 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06113,448,725 - 113,462,191 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46105,432,911 - 105,446,531 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16105,436,367 - 105,449,955 (-)NCBI
Celera699,104,393 - 99,117,857 (-)NCBICelera
Cytogenetic Map6q24NCBI
Med6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555234,550,348 - 4,558,806 (+)NCBIChiLan1.0ChiLan1.0
MED6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21571,702,358 - 71,719,495 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11470,918,876 - 70,936,008 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01451,171,280 - 51,189,026 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11470,040,797 - 70,058,469 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1470,038,686 - 70,058,469 (-)Ensemblpanpan1.1panPan2
MED6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1844,301,449 - 44,323,554 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl844,301,297 - 44,323,483 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha843,966,808 - 43,987,183 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0844,525,850 - 44,546,220 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl844,526,104 - 44,581,506 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1844,179,821 - 44,200,226 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0844,224,815 - 44,245,184 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0844,585,829 - 44,606,192 (-)NCBIUU_Cfam_GSD_1.0
LOC101967362
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864031,850,117 - 31,972,073 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936488195,140 - 218,814 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_00493648897,118 - 99,286 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936488195,629 - 218,762 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MED6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl794,157,731 - 94,219,385 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1794,157,624 - 94,184,606 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27100,607,074 - 100,629,471 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MED6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12447,785,637 - 47,801,404 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2447,781,875 - 47,801,361 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605336,007,877 - 36,024,008 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000027503   ⟹   ENSHGLP00000027262
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473430,604,254 - 30,621,213 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000027504   ⟹   ENSHGLP00000027263
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473430,604,484 - 30,620,757 (+)Ensembl
RefSeq Acc Id: XM_004837294   ⟹   XP_004837351
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473430,604,315 - 30,621,116 (+)NCBI
RefSeq Acc Id: XM_004837295   ⟹   XP_004837352
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473430,604,314 - 30,621,116 (+)NCBI
RefSeq Acc Id: XM_021247118   ⟹   XP_021102777
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473430,604,314 - 30,620,757 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004837351 (Get FASTA)   NCBI Sequence Viewer  
  XP_004837352 (Get FASTA)   NCBI Sequence Viewer  
  XP_021102777 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027262
  ENSHGLP00000027263
  ENSHGLP00100046094
GenBank Protein JAN96187 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004837352   ⟸   XM_004837295
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021102777   ⟸   XM_021247118
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004837351   ⟸   XM_004837294
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J7E7 (UniProtKB/TrEMBL),   G5BQL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000027262   ⟸   ENSHGLT00000027503
RefSeq Acc Id: ENSHGLP00000027263   ⟸   ENSHGLT00000027504


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019384 Ensembl, ENTREZGENE
  ENSHGLG00100004005 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000027503 ENTREZGENE
  ENSHGLT00000027504 ENTREZGENE
  ENSHGLT00100083283 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.580 UniProtKB/TrEMBL
InterPro Mediator_Med6 UniProtKB/TrEMBL
  Mediator_Med6_met/pln UniProtKB/TrEMBL
  Mediator_Med6_sf UniProtKB/TrEMBL
KEGG Report hgl:101697915 UniProtKB/TrEMBL
NCBI Gene Med6 ENTREZGENE
PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6 UniProtKB/TrEMBL
  PTHR13104 UniProtKB/TrEMBL
Pfam Med6 UniProtKB/TrEMBL
PIRSF Mediator_MED6_meta/pln UniProtKB/TrEMBL
UniProt A0A0P6J7E7 ENTREZGENE, UniProtKB/TrEMBL
  G5BQL5 ENTREZGENE, UniProtKB/TrEMBL