Cstf2t (cleavage stimulation factor subunit 2 tau variant) - Rat Genome Database

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Gene: Cstf2t (cleavage stimulation factor subunit 2 tau variant) Heterocephalus glaber
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Symbol: Cstf2t
Name: cleavage stimulation factor subunit 2 tau variant
RGD ID: 18920229
Description: ENCODES a protein that exhibits mRNA binding (inferred); RNA binding (inferred); INVOLVED IN mRNA 3'-end processing (inferred); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; ASSOCIATED WITH Familial Thoracic Aortic Aneurysm 8 (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479111,925,197 - 11,927,188 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479111,924,945 - 11,929,106 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cstf2t
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479111,925,197 - 11,927,188 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479111,924,945 - 11,929,106 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CSTF2T
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381051,695,486 - 51,699,595 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1051,695,486 - 51,699,595 (-)EnsemblGRCh38hg38GRCh38
GRCh371053,455,246 - 53,459,355 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361053,125,252 - 53,129,361 (-)NCBINCBI36Build 36hg18NCBI36
Build 341053,125,251 - 53,129,361NCBI
Celera1046,718,008 - 46,722,117 (-)NCBICelera
Cytogenetic Map10q21.1NCBI
HuRef1047,433,327 - 47,437,436 (-)NCBIHuRef
CHM1_11053,737,028 - 53,741,141 (-)NCBICHM1_1
T2T-CHM13v2.01052,544,505 - 52,548,614 (-)NCBIT2T-CHM13v2.0
Cstf2t
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391931,060,241 - 31,063,992 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1931,060,237 - 31,064,469 (+)EnsemblGRCm39 Ensembl
GRCm381931,082,841 - 31,086,592 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1931,082,837 - 31,087,069 (+)EnsemblGRCm38mm10GRCm38
MGSCv371931,157,331 - 31,161,082 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361931,149,001 - 31,152,589 (+)NCBIMGSCv36mm8
Celera1931,867,444 - 31,871,195 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1925.94NCBI
Cstf2t
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81238,366,042 - 238,369,608 (+)NCBIGRCr8
mRatBN7.21228,952,617 - 228,956,183 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1228,952,504 - 228,955,873 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1237,310,067 - 237,313,633 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01244,239,783 - 244,243,349 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01237,077,535 - 237,081,100 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01249,574,954 - 249,578,520 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1249,574,954 - 249,578,520 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01256,813,751 - 256,817,317 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41235,060,489 - 235,064,055 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11235,224,192 - 235,226,470 (+)NCBI
Celera1226,077,478 - 226,081,044 (+)NCBICelera
Cytogenetic Map1q52NCBI
Cstf2t
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554256,832,580 - 6,834,499 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554256,830,775 - 6,834,799 (-)NCBIChiLan1.0ChiLan1.0
CSTF2T
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2864,004,122 - 64,015,913 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11064,007,666 - 64,012,290 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01048,342,491 - 48,346,810 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11050,477,193 - 50,481,591 (-)NCBIpanpan1.1PanPan1.1panPan2
CSTF2T
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2636,151,251 - 36,153,709 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02637,797,337 - 37,799,769 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2637,797,408 - 37,799,309 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12635,699,493 - 35,701,917 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02635,288,227 - 35,290,664 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02636,528,531 - 36,530,957 (+)NCBIUU_Cfam_GSD_1.0
Cstf2t
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721375,816,561 - 75,820,484 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936787838,485 - 840,353 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936787838,153 - 842,118 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSTF2T
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1498,105,772 - 98,110,358 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11498,104,957 - 98,109,479 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214106,806,097 - 106,809,854 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004858321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01065648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000021865   ⟹   ENSHGLP00000021655
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462479111,925,197 - 11,927,188 (+)Ensembl
RefSeq Acc Id: XM_004858321   ⟹   XP_004858378
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479111,924,945 - 11,929,106 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004858378 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004858378   ⟸   XM_004858321
- UniProtKB: A0AAX6PSL5 (UniProtKB/TrEMBL),   G5CAC2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000021655   ⟸   ENSHGLT00000021865


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015478 Ensembl
Gene3D-CATH 1.25.40.630 UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/TrEMBL
  Transcription termination and cleavage factor, C-terminal domain UniProtKB/TrEMBL
InterPro CSTF2_hinge UniProtKB/TrEMBL
  CSTF_C UniProtKB/TrEMBL
  CSTF_C_sf UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Cstf2t ENTREZGENE
PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 UniProtKB/TrEMBL
  CLEAVAGE STIMULATION FACTOR SUBUNIT 2 TAU VARIANT UniProtKB/TrEMBL
Pfam CSTF2_hinge UniProtKB/TrEMBL
  CSTF_C UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP RNA-binding domain, RBD UniProtKB/TrEMBL
UniProt A0AAX6PSL5 ENTREZGENE, UniProtKB/TrEMBL
  G5CAC2 ENTREZGENE, UniProtKB/TrEMBL