Gal3st2 (galactose-3-O-sulfotransferase 2) - Rat Genome Database

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Gene: Gal3st2 (galactose-3-O-sulfotransferase 2) Heterocephalus glaber
Analyze
Symbol: Gal3st2
Name: galactose-3-O-sulfotransferase 2
RGD ID: 18920065
Description: ENCODES a protein that exhibits sulfotransferase activity (ortholog); INVOLVED IN glycoprotein biosynthetic process (ortholog); sulfation (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248475,696,086 - 5,698,750 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248475,688,903 - 5,700,300 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gal3st2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248475,696,086 - 5,698,750 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248475,688,903 - 5,700,300 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GAL3ST2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,776,822 - 241,804,287 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,776,822 - 241,804,287 (+)EnsemblGRCh38hg38GRCh38
GRCh372242,716,237 - 242,743,702 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362242,364,913 - 242,392,375 (+)NCBINCBI36Build 36hg18NCBI36
Build 342242,436,229 - 242,470,393NCBI
Celera2236,386,575 - 236,413,342 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2234,469,351 - 234,496,993 (+)NCBIHuRef
CHM1_12242,720,833 - 242,748,295 (+)NCBICHM1_1
T2T-CHM13v2.02242,279,352 - 242,306,816 (+)NCBIT2T-CHM13v2.0
Gal3st2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,789,066 - 93,804,220 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,789,028 - 93,804,216 (+)EnsemblGRCm39 Ensembl
GRCm38193,861,344 - 93,876,494 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,861,306 - 93,876,494 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,757,921 - 95,773,071 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,691,750 - 95,706,900 (+)NCBIMGSCv36mm8
Celera196,812,166 - 96,813,691 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map147.38NCBI
Gal3st2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89101,823,815 - 101,836,507 (+)NCBIGRCr8
mRatBN7.2994,382,456 - 94,387,990 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.09100,982,996 - 100,994,226 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,990,523 - 100,993,206 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09100,635,216 - 100,646,613 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4993,130,424 - 93,140,436 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera991,910,659 - 91,921,898 (+)NCBICelera
Cytogenetic Map9q36NCBI
Gal3st2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495554284,629 - 87,356 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495554282,972 - 94,041 (-)NCBIChiLan1.0ChiLan1.0
LOC100983171
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210141,450,578 - 141,460,657 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112141,450,693 - 141,457,171 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012130,906,218 - 130,914,157 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B247,839,465 - 247,868,899 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B247,839,465 - 247,868,899 (+)Ensemblpanpan1.1panPan2
GAL3ST2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12551,581,449 - 51,594,240 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2551,581,546 - 51,597,774 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2551,803,190 - 51,815,938 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02551,782,773 - 51,795,586 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12551,632,680 - 51,645,489 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02551,371,927 - 51,384,738 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02551,649,101 - 51,661,919 (+)NCBIUU_Cfam_GSD_1.0
Gal3st2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303193,030,072 - 193,031,864 (+)NCBIHiC_Itri_2
D2HGDH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15140,308,433 - 140,322,618 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115140,308,612 - 140,322,624 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GAL3ST2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110127,811,609 - 127,844,393 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10127,837,189 - 127,842,906 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604071,475,021 - 71,484,464 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021247424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01089026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000004587   ⟹   ENSHGLP00000004525
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248475,696,086 - 5,698,750 (+)Ensembl
RefSeq Acc Id: XM_021247424   ⟹   XP_021103083
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248475,688,903 - 5,700,300 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021103083 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021103083   ⟸   XM_021247424
- UniProtKB: G5C3S6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000004525   ⟸   ENSHGLT00000004587


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003311 Ensembl
Gene3D-CATH P-loop containing nucleotide triphosphate hydrolases UniProtKB/TrEMBL
InterPro Gal-3-0_sulfotransfrase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Gal3st2 ENTREZGENE
PANTHER GALACTOSE-3-O-SULFOTRANSFERASE UniProtKB/TrEMBL
  GALACTOSE-3-O-SULFOTRANSFERASE 2 UniProtKB/TrEMBL
Pfam Gal-3-0_sulfotr UniProtKB/TrEMBL
Superfamily-SCOP P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL
UniProt G5C3S6 ENTREZGENE, UniProtKB/TrEMBL