Abcf1 (ATP binding cassette subfamily F member 1) - Rat Genome Database

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Gene: Abcf1 (ATP binding cassette subfamily F member 1) Heterocephalus glaber
Analyze
Symbol: Abcf1
Name: ATP binding cassette subfamily F member 1
RGD ID: 18919686
Description: ENCODES a protein that exhibits ribosome binding (ortholog); translation activator activity (ortholog); INVOLVED IN positive regulation of translation (ortholog); ribosome biogenesis (ortholog); translational initiation (ortholog); ASSOCIATED WITH allergic disease (ortholog); Disease Progression (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family F member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475425,098,182 - 25,110,092 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475425,097,202 - 25,110,164 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Abcf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475425,098,182 - 25,110,092 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475425,097,202 - 25,110,164 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ABCF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,571,442 - 30,591,522 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,571,393 - 30,597,179 (+)EnsemblGRCh38hg38GRCh38
GRCh37630,539,219 - 30,559,299 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,647,149 - 30,667,288 (+)NCBINCBI36Build 36hg18NCBI36
Build 34630,647,148 - 30,667,067NCBI
Celera632,137,288 - 32,157,421 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,339,240 - 30,359,384 (+)NCBIHuRef
CHM1_1630,541,266 - 30,561,417 (+)NCBICHM1_1
T2T-CHM13v2.0630,435,621 - 30,455,699 (+)NCBIT2T-CHM13v2.0
Abcf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,267,711 - 36,280,642 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1736,267,711 - 36,280,653 (-)EnsemblGRCm39 Ensembl
GRCm381735,956,819 - 35,969,750 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,956,819 - 35,969,761 (-)EnsemblGRCm38mm10GRCm38
MGSCv371736,093,764 - 36,106,695 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,564,872 - 35,577,803 (-)NCBIMGSCv36mm8
Celera1739,470,344 - 39,483,322 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.8NCBI
Abcf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8202,807,315 - 2,820,240 (+)NCBIGRCr8
mRatBN7.2202,802,519 - 2,815,433 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl202,802,488 - 2,815,433 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx202,854,007 - 2,867,015 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0202,858,976 - 2,871,984 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0202,885,513 - 2,898,407 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,309,914 - 3,322,828 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,309,899 - 3,322,825 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,407,475 - 5,420,356 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4202,953,604 - 2,962,140 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1202,953,831 - 2,962,361 (+)NCBI
Celera20228,398 - 241,279 (+)NCBICelera
Cytogenetic Map20p12NCBI
Abcf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583600,398 - 606,820 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955583600,381 - 607,211 (+)NCBIChiLan1.0ChiLan1.0
ABCF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,129,737 - 45,149,503 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,092,823 - 41,112,558 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,314,216 - 30,333,912 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,184,720 - 31,203,789 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,184,831 - 31,203,059 (+)Ensemblpanpan1.1panPan2
ABCF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112396,947 - 410,951 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12401,118 - 411,179 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12527,719 - 549,348 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012533,984 - 555,482 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12540,881 - 555,480 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112390,728 - 412,380 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012460,059 - 481,701 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012529,843 - 551,482 (+)NCBIUU_Cfam_GSD_1.0
Abcf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494633,882,849 - 33,899,757 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936837248,133 - 265,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,126,283 - 23,145,006 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,126,255 - 23,144,030 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2726,795,857 - 26,813,632 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103221832
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,866,152 - 41,885,673 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,866,062 - 41,884,972 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604430,235,086 - 30,259,243 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027249   ⟹   ENSHGLP00000027010
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475425,098,182 - 25,110,092 (-)Ensembl
RefSeq Acc Id: XM_004847091   ⟹   XP_004847148
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475425,097,202 - 25,110,164 (-)NCBI
RefSeq Acc Id: XM_013072926   ⟹   XP_012928380
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475425,097,202 - 25,110,164 (-)NCBI
RefSeq Acc Id: XM_021260166   ⟹   XP_021115825
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475425,097,202 - 25,109,533 (-)NCBI
RefSeq Acc Id: XM_021260167   ⟹   XP_021115826
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475425,097,202 - 25,109,859 (-)NCBI
RefSeq Acc Id: XM_021260168   ⟹   XP_021115827
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475425,097,202 - 25,110,124 (-)NCBI
RefSeq Acc Id: XM_021260169   ⟹   XP_021115828
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475425,097,202 - 25,109,533 (-)NCBI
RefSeq Acc Id: XM_021260170   ⟹   XP_021115829
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475425,097,202 - 25,109,859 (-)NCBI
RefSeq Acc Id: XM_021260171   ⟹   XP_021115830
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475425,097,202 - 25,110,124 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004847148   ⟸   XM_004847091
- Peptide Label: isoform X2
- UniProtKB: G5C3B5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928380   ⟸   XM_013072926
- Peptide Label: isoform X1
- UniProtKB: G5C3B5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115830   ⟸   XM_021260171
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021115827   ⟸   XM_021260168
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021115829   ⟸   XM_021260170
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021115826   ⟸   XM_021260167
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021115828   ⟸   XM_021260169
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021115825   ⟸   XM_021260166
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000027010   ⟸   ENSHGLT00000027249


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019209 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027249 ENTREZGENE
Gene3D-CATH P-loop containing nucleotide triphosphate hydrolases UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC_transporter-like_ATP-bd UniProtKB/TrEMBL
  ABC_transporter-like_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Abcf1 ENTREZGENE
PANTHER ATP-BINDING CASSETTE SUB-FAMILY F MEMBER 1 UniProtKB/TrEMBL
  ATP-BINDING TRANSPORT PROTEIN-RELATED UniProtKB/TrEMBL
Pfam ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL
UniProt G5C3B5 ENTREZGENE, UniProtKB/TrEMBL