Col4a5 (collagen type IV alpha 5 chain) - Rat Genome Database

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Pathways
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Gene: Col4a5 (collagen type IV alpha 5 chain) Heterocephalus glaber
Analyze
Symbol: Col4a5
Name: collagen type IV alpha 5 chain
RGD ID: 18919463
Description: INVOLVED IN collagen-activated tyrosine kinase receptor signaling pathway (ortholog); neuromuscular junction development (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH Alport syndrome (ortholog); atypical hemolytic-uremic syndrome (ortholog); autistic disorder (ortholog); FOUND IN basement membrane (ortholog); collagen type IV trimer (ortholog); neuromuscular junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Collagen alpha-5(IV) chain; Oxysterol-binding protein-related protein 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248037,511,041 - 7,916,031 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248037,509,877 - 7,916,365 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Col4a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248037,511,041 - 7,916,031 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248037,509,877 - 7,916,365 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
COL4A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X108,439,838 - 108,697,545 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX108,439,838 - 108,697,545 (+)EnsemblGRCh38hg38GRCh38
GRCh37X107,683,068 - 107,940,775 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X107,569,810 - 107,827,431 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X107,489,298 - 107,746,920NCBI
CeleraX108,154,585 - 108,412,194 (+)NCBICelera
Cytogenetic MapXq22.3NCBI
HuRefX97,304,982 - 97,564,656 (+)NCBIHuRef
CHM1_1X107,593,900 - 107,851,643 (+)NCBICHM1_1
T2T-CHM13v2.0X106,877,380 - 107,135,128 (+)NCBIT2T-CHM13v2.0
Col4a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X140,258,367 - 140,472,232 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX140,258,381 - 140,472,230 (+)EnsemblGRCm39 Ensembl
GRCm38X141,475,370 - 141,689,236 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX141,475,385 - 141,689,234 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X137,909,962 - 138,123,778 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X136,721,787 - 136,935,548 (+)NCBIMGSCv36mm8
CeleraX125,485,537 - 125,689,734 (+)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX62.16NCBI
Col4a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X109,907,251 - 110,111,214 (+)NCBIGRCr8
mRatBN7.2X105,118,762 - 105,322,699 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX105,118,820 - 105,322,692 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X112,769,595 - 112,983,720 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX112,769,645 - 112,983,685 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X111,226,503 - 111,437,171 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X36,918,697 - 37,130,659 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX104,529,279 - 104,731,865 (+)NCBICelera
Cytogenetic MapXq33NCBI
Col4a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554907,168,676 - 7,409,887 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554907,168,725 - 7,409,655 (-)NCBIChiLan1.0ChiLan1.0
COL4A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X107,922,151 - 108,180,219 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X107,925,755 - 108,183,823 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X97,538,978 - 97,797,019 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X107,908,812 - 108,166,580 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX108,008,689 - 108,166,095 (+)Ensemblpanpan1.1panPan2
COL4A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X81,982,119 - 82,248,428 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX81,982,275 - 82,247,679 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX68,102,838 - 68,368,300 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X83,631,540 - 83,897,969 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX83,631,681 - 83,897,956 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X81,090,795 - 81,356,504 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X82,803,355 - 83,068,810 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X82,590,448 - 82,853,593 (+)NCBIUU_Cfam_GSD_1.0
Col4a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X81,297,280 - 81,514,238 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364996,144,857 - 6,360,368 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364996,143,736 - 6,360,565 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL4A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX88,958,849 - 89,183,372 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X88,958,837 - 89,183,306 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X103,651,986 - 103,716,022 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COL4A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X96,307,927 - 96,570,592 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606521,406,185 - 21,687,027 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021241620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01072045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH173276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000020394   ⟹   ENSHGLP00000020193
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248037,511,041 - 7,916,031 (-)Ensembl
RefSeq Acc Id: XM_021241620   ⟹   XP_021097279
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248037,509,877 - 7,916,365 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021097279 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB16310 (Get FASTA)   NCBI Sequence Viewer  
  EHB16311 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020193
Reference Protein Sequences
RefSeq Acc Id: XP_021097279   ⟸   XM_021241620
RefSeq Acc Id: ENSHGLP00000020193   ⟸   ENSHGLT00000020394


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014456 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020394 ENTREZGENE
NCBI Gene Col4a5 ENTREZGENE