Bcap29 (B cell receptor associated protein 29) - Rat Genome Database

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Gene: Bcap29 (B cell receptor associated protein 29) Heterocephalus glaber
Analyze
Symbol: Bcap29
Name: B cell receptor associated protein 29
RGD ID: 18919440
Description: INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); protein localization to endoplasmic reticulum exit site (ortholog); ASSOCIATED WITH amenorrhea (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: B-cell receptor-associated protein 29
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473922,121,480 - 22,171,589 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473922,122,859 - 22,171,621 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Bcap29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473922,121,480 - 22,171,589 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473922,122,859 - 22,171,621 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BCAP29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387107,580,007 - 107,623,317 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7107,580,246 - 107,629,170 (+)EnsemblGRCh38hg38GRCh38
GRCh377107,220,452 - 107,263,762 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367107,007,946 - 107,058,401 (+)NCBINCBI36Build 36hg18NCBI36
Build 347106,814,660 - 106,854,874NCBI
Celera7102,025,694 - 102,069,076 (+)NCBICelera
Cytogenetic Map7q22.3NCBI
HuRef7101,581,486 - 101,624,158 (+)NCBIHuRef
CHM1_17107,154,373 - 107,197,733 (+)NCBICHM1_1
T2T-CHM13v2.07108,896,051 - 108,939,457 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27106,581,511 - 106,624,867 (+)NCBI
Bcap29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391231,645,353 - 31,684,657 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1231,640,966 - 31,684,657 (-)EnsemblGRCm39 Ensembl
GRCm381231,595,354 - 31,634,658 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,590,967 - 31,634,658 (-)EnsemblGRCm38mm10GRCm38
MGSCv371232,280,219 - 32,319,523 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361232,181,110 - 32,219,846 (-)NCBIMGSCv36mm8
Celera1233,045,348 - 33,084,363 (-)NCBICelera
Cytogenetic Map12A2- A3NCBI
cM Map1213.63NCBI
Bcap29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8653,910,209 - 53,950,206 (-)NCBIGRCr8
mRatBN7.2648,182,702 - 48,222,698 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,182,706 - 48,222,720 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx648,490,038 - 48,530,002 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0648,804,954 - 48,844,921 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0648,245,102 - 48,285,067 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0650,883,758 - 50,923,743 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl650,883,787 - 50,923,510 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0659,555,799 - 59,595,751 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4649,464,362 - 49,504,424 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1649,467,488 - 49,507,550 (-)NCBI
Celera647,384,728 - 47,424,848 (-)NCBICelera
Cytogenetic Map6q16NCBI
Bcap29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541011,934,129 - 11,988,458 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541011,934,158 - 11,988,479 (+)NCBIChiLan1.0ChiLan1.0
BCAP29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26144,423,236 - 144,466,194 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17192,693,203 - 192,736,162 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0799,559,131 - 99,602,058 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17112,283,078 - 112,325,254 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7112,283,078 - 112,322,422 (+)Ensemblpanpan1.1panPan2
BCAP29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11812,969,594 - 13,021,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1812,970,411 - 13,022,022 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1812,613,386 - 12,665,745 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01813,240,776 - 13,293,162 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1813,211,079 - 13,292,997 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11813,057,205 - 13,109,556 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01812,977,363 - 13,029,720 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01813,254,746 - 13,307,191 (-)NCBIUU_Cfam_GSD_1.0
LOC101977061
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511855,376,334 - 55,430,947 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647916,542,969 - 16,555,022 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_00493647916,502,872 - 16,541,760 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647916,502,581 - 16,542,288 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCAP29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9107,292,309 - 107,351,981 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19107,292,273 - 107,337,464 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29118,047,000 - 118,090,483 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BCAP29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12176,501,128 - 76,539,491 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2176,501,663 - 76,543,758 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604227,320,234 - 27,363,497 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000019729   ⟹   ENSHGLP00000019536
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473922,121,480 - 22,171,589 (-)Ensembl
RefSeq Acc Id: XM_004839659   ⟹   XP_004839716
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473922,122,859 - 22,171,621 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004839716 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019536
Reference Protein Sequences
RefSeq Acc Id: XP_004839716   ⟸   XM_004839659
RefSeq Acc Id: ENSHGLP00000019536   ⟸   ENSHGLT00000019729


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013985 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019729 ENTREZGENE
NCBI Gene Bcap29 ENTREZGENE