Apobec2 (apolipoprotein B mRNA editing enzyme catalytic subunit 2) - Rat Genome Database

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Gene: Apobec2 (apolipoprotein B mRNA editing enzyme catalytic subunit 2) Heterocephalus glaber
Analyze
Symbol: Apobec2
Name: apolipoprotein B mRNA editing enzyme catalytic subunit 2
RGD ID: 18919134
Description: ENCODES a protein that exhibits catalytic activity (inferred); cytidine deaminase activity (inferred); identical protein binding (inferred); INVOLVED IN cytidine to uridine editing (ortholog); mRNA modification (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C->U-editing enzyme APOBEC-2; Putative C->U-editing enzyme APOBEC-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475417,689,595 - 17,700,316 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475417,689,587 - 17,700,318 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Apobec2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475417,689,595 - 17,700,316 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475417,689,587 - 17,700,318 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
APOBEC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38641,053,202 - 41,064,891 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl641,053,202 - 41,064,891 (+)EnsemblGRCh38hg38GRCh38
GRCh37641,020,941 - 41,032,630 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36641,128,991 - 41,140,233 (+)NCBINCBI36Build 36hg18NCBI36
Build 34641,128,990 - 41,140,233NCBI
Celera642,573,621 - 42,585,311 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef640,738,899 - 40,750,382 (+)NCBIHuRef
CHM1_1641,023,446 - 41,035,133 (+)NCBICHM1_1
T2T-CHM13v2.0640,881,766 - 40,893,448 (+)NCBIT2T-CHM13v2.0
Apobec2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391748,726,259 - 48,739,756 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1748,726,259 - 48,739,958 (-)EnsemblGRCm39 Ensembl
GRCm381748,419,231 - 48,432,728 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1748,419,231 - 48,432,930 (-)EnsemblGRCm38mm10GRCm38
MGSCv371748,558,556 - 48,572,053 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361747,884,798 - 47,898,295 (-)NCBIMGSCv36mm8
Celera1751,850,648 - 51,864,329 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1724.02NCBI
Apobec2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,062,561 - 20,076,074 (+)NCBIGRCr8
mRatBN7.2912,564,955 - 12,578,461 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl912,564,920 - 12,578,458 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx921,078,116 - 21,091,657 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0926,144,334 - 26,157,881 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0924,527,382 - 24,540,952 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0914,529,218 - 14,542,731 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl914,529,218 - 14,542,731 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0913,451,720 - 13,465,233 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.497,947,500 - 7,961,013 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.197,947,512 - 7,961,011 (+)NCBI
Celera910,339,525 - 10,352,851 (+)NCBICelera
Cytogenetic Map9q12NCBI
Apobec2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554377,724,988 - 7,735,893 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554377,725,092 - 7,735,892 (+)NCBIChiLan1.0ChiLan1.0
APOBEC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2555,549,682 - 55,561,639 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1651,418,800 - 51,432,812 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0640,641,211 - 40,652,975 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1641,950,194 - 41,963,086 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl641,950,194 - 41,963,086 (+)Ensemblpanpan1.1panPan2
APOBEC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1129,808,276 - 9,819,973 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl129,808,297 - 9,819,985 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha129,838,514 - 9,850,209 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01210,287,773 - 10,299,455 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1210,287,792 - 10,299,468 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1129,820,060 - 9,831,740 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0129,901,879 - 9,913,563 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0129,996,527 - 10,008,237 (+)NCBIUU_Cfam_GSD_1.0
Apobec2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494645,190,396 - 45,201,160 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647618,758,582 - 18,769,835 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647618,759,040 - 18,769,815 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOBEC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl736,364,300 - 36,384,295 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1736,364,258 - 36,381,012 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2741,660,757 - 41,675,416 (+)NCBISscrofa10.2Sscrofa10.2susScr3
APOBEC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11731,091,668 - 31,104,534 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1731,095,184 - 31,103,526 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604441,053,972 - 41,065,649 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000024308   ⟹   ENSHGLP00000024089
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475417,689,595 - 17,700,316 (-)Ensembl
RefSeq Acc Id: XM_004846622   ⟹   XP_004846679
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475417,689,587 - 17,700,318 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004846679 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB10814 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000024089
  ENSHGLP00100026514
GenBank Protein JAN96703 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004846679   ⟸   XM_004846622
- UniProtKB: G5BNG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000024089   ⟸   ENSHGLT00000024308


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017169 Ensembl, ENTREZGENE
  ENSHGLG00100019442 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000024308 ENTREZGENE
  ENSHGLT00100026782 UniProtKB/TrEMBL
Gene3D-CATH Cytidine Deaminase, domain 2 UniProtKB/TrEMBL
InterPro CMP_dCMP_dom UniProtKB/TrEMBL
  Cytidine_deaminase-like UniProtKB/TrEMBL
KEGG Report hgl:101720974 UniProtKB/TrEMBL
NCBI Gene Apobec2 ENTREZGENE
PANTHER C-U-EDITING ENZYME APOBEC-2 UniProtKB/TrEMBL
  MRNA EDITING ENZYME UniProtKB/TrEMBL
Pfam APOBEC2 UniProtKB/TrEMBL
PROSITE CYT_DCMP_DEAMINASES_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF53927 UniProtKB/TrEMBL
UniProt G5BNG8 ENTREZGENE, UniProtKB/TrEMBL