Abcd2 (ATP binding cassette subfamily D member 2) - Rat Genome Database

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Gene: Abcd2 (ATP binding cassette subfamily D member 2) Heterocephalus glaber
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Symbol: Abcd2
Name: ATP binding cassette subfamily D member 2
RGD ID: 18919025
Description: ENCODES a protein that exhibits fatty acyl-CoA hydrolase activity (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN response to bacterium (ortholog); very long-chain fatty acid metabolic process (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); hypothyroidism (ortholog); FOUND IN membrane (inferred); peroxisomal membrane (inferred); peroxisome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family D member 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624778847,879 - 909,727 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624778854,297 - 912,498 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Abcd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624778847,879 - 909,727 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624778854,297 - 912,498 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ABCD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381239,531,025 - 39,619,803 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1239,550,033 - 39,619,803 (-)EnsemblGRCh38hg38GRCh38
GRCh371239,943,835 - 40,013,605 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361238,232,813 - 38,300,237 (-)NCBINCBI36Build 36hg18NCBI36
Build 341238,232,813 - 38,300,237NCBI
Celera1238,749,047 - 38,818,059 (-)NCBICelera
Cytogenetic Map12q12ENTREZGENE
HuRef1236,971,383 - 37,040,198 (-)NCBIHuRef
CHM1_11239,911,021 - 39,979,850 (-)NCBICHM1_1
T2T-CHM13v2.01239,480,907 - 39,601,214 (-)NCBIT2T-CHM13v2.0
Abcd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391591,029,874 - 91,076,013 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1591,030,074 - 91,076,002 (-)EnsemblGRCm39 Ensembl
GRCm381591,145,871 - 91,192,007 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1591,145,871 - 91,191,799 (-)EnsemblGRCm38mm10GRCm38
MGSCv371590,976,302 - 91,022,238 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361590,973,638 - 91,019,574 (-)NCBIMGSCv36mm8
Celera1593,253,156 - 93,299,066 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1546.0NCBI
Abcd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87124,142,597 - 124,191,202 (-)NCBIGRCr8
mRatBN7.27122,263,034 - 122,311,642 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7122,263,032 - 122,311,642 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7124,054,640 - 124,103,336 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07126,280,755 - 126,329,211 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07126,207,915 - 126,256,642 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07132,294,564 - 132,343,169 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7132,294,562 - 132,343,169 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07131,968,475 - 132,017,044 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47129,542,758 - 129,591,363 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17129,577,902 - 129,626,508 (-)NCBI
Celera7118,713,620 - 118,762,172 (-)NCBICelera
Cytogenetic Map7q35NCBI
Abcd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955505721,222 - 798,470 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955505717,800 - 769,702 (+)NCBIChiLan1.0ChiLan1.0
ABCD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21054,525,947 - 54,601,622 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11254,522,683 - 54,598,358 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01249,082,122 - 49,158,524 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11249,941,914 - 50,011,140 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1249,941,914 - 50,011,140 (+)Ensemblpanpan1.1panPan2
ABCD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12714,015,093 - 14,084,362 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2714,015,091 - 14,163,312 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2732,351,661 - 32,426,133 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02714,182,734 - 14,251,081 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2714,187,982 - 14,251,183 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12713,992,155 - 14,060,013 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02714,030,140 - 14,098,038 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02732,500,349 - 32,568,488 (-)NCBIUU_Cfam_GSD_1.0
Abcd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494574,459,561 - 74,544,026 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366071,292,888 - 1,343,334 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366071,292,964 - 1,345,671 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl571,122,325 - 71,180,723 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1571,123,187 - 71,180,758 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2573,679,380 - 73,746,350 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABCD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11135,818,451 - 35,884,696 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037210,906,997 - 210,973,843 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Sequence


Ensembl Acc Id: ENSHGLT00000017741   ⟹   ENSHGLP00000017566
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624778847,879 - 909,727 (+)Ensembl
RefSeq Acc Id: XM_004855005   ⟹   XP_004855062
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624778854,297 - 912,498 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004855062 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB08719 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017566
  ENSHGLP00100018103
GenBank Protein JAN96994 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004855062   ⟸   XM_004855005
- UniProtKB: A0A0P6J1A9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000017566   ⟸   ENSHGLT00000017741


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012569 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100013344 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000017741 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100018293 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1560.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC1_TM_dom UniProtKB/TrEMBL
  ABC1_TM_sf UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  ABC_transporter_sub-D UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Abcd2 ENTREZGENE
PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER UniProtKB/TrEMBL
  PTHR11384:SF24 UniProtKB/TrEMBL
Pfam ABC_membrane_2 UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TM1F UniProtKB/TrEMBL
  ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF90123 UniProtKB/TrEMBL
UniProt A0A0P6J1A9 ENTREZGENE, UniProtKB/TrEMBL