Psmb3 (proteasome 20S subunit beta 3) - Rat Genome Database

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Gene: Psmb3 (proteasome 20S subunit beta 3) Heterocephalus glaber
Analyze
Symbol: Psmb3
Name: proteasome 20S subunit beta 3
RGD ID: 18918979
Description: INVOLVED IN proteasome-mediated ubiquitin-dependent protein catabolic process (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proteasome subunit beta 3; proteasome subunit beta type-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247953,931,923 - 3,939,305 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247953,932,534 - 3,939,411 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Psmb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247953,931,923 - 3,939,305 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247953,932,534 - 3,939,411 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PSMB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381738,752,741 - 38,764,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1738,752,741 - 38,764,225 (+)EnsemblGRCh38hg38GRCh38
GRCh371736,908,994 - 36,920,478 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361734,162,528 - 34,174,004 (+)NCBINCBI36Build 36hg18NCBI36
Build 341734,162,527 - 34,174,003NCBI
Celera1733,569,961 - 33,581,439 (+)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1732,705,092 - 32,716,582 (+)NCBIHuRef
CHM1_11737,144,328 - 37,155,785 (+)NCBICHM1_1
T2T-CHM13v2.01739,615,825 - 39,627,303 (+)NCBIT2T-CHM13v2.0
Psmb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,594,260 - 97,604,326 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1197,594,225 - 97,604,326 (+)EnsemblGRCm39 Ensembl
GRCm381197,703,434 - 97,713,500 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,703,399 - 97,713,500 (+)EnsemblGRCm38mm10GRCm38
MGSCv371197,564,748 - 97,574,814 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361197,519,524 - 97,529,590 (+)NCBIMGSCv36mm8
Celera11107,353,226 - 107,363,294 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.07NCBI
Psmb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81083,193,787 - 83,200,883 (+)NCBIGRCr8
mRatBN7.21082,697,425 - 82,704,521 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1082,697,425 - 82,704,521 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1087,645,421 - 87,652,517 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01087,143,508 - 87,150,604 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01082,536,090 - 82,543,186 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01085,646,646 - 85,653,729 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1085,646,633 - 85,653,729 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01085,437,477 - 85,444,560 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41086,452,533 - 86,459,616 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11086,466,901 - 86,473,986 (+)NCBI
Celera1081,453,039 - 81,460,122 (+)NCBICelera
Cytogenetic Map10q31NCBI
Psmb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,835,173 - 13,841,626 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,835,173 - 13,841,626 (+)NCBIChiLan1.0ChiLan1.0
PSMB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21926,186,294 - 26,197,912 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11728,069,869 - 28,081,479 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01718,509,375 - 18,526,743 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11718,783,757 - 18,796,012 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1718,783,757 - 18,796,011 (-)Ensemblpanpan1.1panPan2
PSMB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1923,474,476 - 23,484,408 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl923,474,477 - 23,484,430 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha922,946,437 - 22,956,595 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0924,270,033 - 24,280,182 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl924,270,034 - 24,280,204 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1923,041,786 - 23,051,702 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0923,302,863 - 23,312,780 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0923,428,878 - 23,439,025 (-)NCBIUU_Cfam_GSD_1.0
Psmb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560222,911,416 - 22,920,189 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649014,154,968 - 14,163,737 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649014,154,992 - 14,163,720 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,346,978 - 23,357,615 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,347,060 - 23,357,616 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap12p13-p11NCBI
PSMB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11667,430,987 - 67,442,802 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1667,431,052 - 67,442,814 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607738,428,371 - 38,440,225 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000022917   ⟹   ENSHGLP00000022703
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247953,931,923 - 3,939,305 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000022918   ⟹   ENSHGLP00000022704
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247953,932,594 - 3,939,061 (-)Ensembl
RefSeq Acc Id: XM_004859536   ⟹   XP_004859593
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247953,932,534 - 3,939,410 (-)NCBI
RefSeq Acc Id: XM_004859537   ⟹   XP_004859594
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247953,932,534 - 3,939,411 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004859593 (Get FASTA)   NCBI Sequence Viewer  
  XP_004859594 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022703
  ENSHGLP00100012818
GenBank Protein JAO03513 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004859594   ⟸   XM_004859537
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004859593   ⟸   XM_004859536
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K916 (UniProtKB/TrEMBL),   G5BK63 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000022703   ⟸   ENSHGLT00000022917
RefSeq Acc Id: ENSHGLP00000022704   ⟸   ENSHGLT00000022918


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016190 Ensembl, ENTREZGENE
  ENSHGLG00100009493 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000022917 ENTREZGENE
  ENSHGLT00100012964 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/TrEMBL
  Proteasome_beta_3 UniProtKB/TrEMBL
  Proteasome_bsu_CS UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/TrEMBL
  Proteasome_suB-type UniProtKB/TrEMBL
KEGG Report hgl:101720602 UniProtKB/TrEMBL
NCBI Gene Psmb3 ENTREZGENE
PANTHER METALLOPROTEASE TLDD UniProtKB/TrEMBL
  PROTEASOME CORE PARTICLE SUBUNIT BETA 3 UniProtKB/TrEMBL
Pfam Proteasome UniProtKB/TrEMBL
PROSITE PROTEASOME_BETA_1 UniProtKB/TrEMBL
  PROTEASOME_BETA_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/TrEMBL
UniProt A0A0P6K916 ENTREZGENE, UniProtKB/TrEMBL
  G5BK63 ENTREZGENE, UniProtKB/TrEMBL