Rpl35a (ribosomal protein L35a) - Rat Genome Database

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Gene: Rpl35a (ribosomal protein L35a) Heterocephalus glaber
Analyze
Symbol: Rpl35a
Name: ribosomal protein L35a
RGD ID: 18918956
Description: ENCODES a protein that exhibits ribonucleoprotein complex binding (ortholog); INVOLVED IN rRNA processing (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); Diamond-Blackfan anemia 5 (ortholog); glioblastoma (ortholog); FOUND IN cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L35a
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473060,872,188 - 60,879,204 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473060,875,693 - 60,879,439 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rpl35a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473060,872,188 - 60,879,204 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473060,875,693 - 60,879,439 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RPL35A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383197,950,190 - 197,956,610 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3197,950,190 - 197,956,610 (+)EnsemblGRCh38hg38GRCh38
GRCh373197,677,061 - 197,683,481 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363199,161,449 - 199,167,119 (+)NCBINCBI36Build 36hg18NCBI36
Build 343199,165,361 - 199,171,029NCBI
Celera3196,293,205 - 196,298,875 (+)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3194,979,535 - 194,985,206 (+)NCBIHuRef
CHM1_13197,647,972 - 197,653,642 (+)NCBICHM1_1
T2T-CHM13v2.03200,681,894 - 200,689,065 (+)NCBIT2T-CHM13v2.0
Rpl35a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391632,876,823 - 32,880,559 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1632,876,823 - 32,880,559 (+)EnsemblGRCm39 Ensembl
GRCm381633,056,453 - 33,060,189 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1633,056,453 - 33,060,189 (+)EnsemblGRCm38mm10GRCm38
MGSCv371633,056,539 - 33,060,275 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361632,976,883 - 32,979,912 (+)NCBIMGSCv36mm8
Celera1633,535,865 - 33,539,595 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1623.59NCBI
Rpl35a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81181,231,114 - 81,235,094 (-)NCBIGRCr8
mRatBN7.21167,726,031 - 67,729,953 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5158,537,765 - 158,544,128 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1167,726,032 - 67,729,942 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0127,186,459 - 7,186,874 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01174,048,184 - 74,052,105 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41169,548,986 - 69,552,929 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera127,830,963 - 7,831,378 (-)NCBICelera
Cytogenetic Map11q22NCBI
Rpl35a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542011,957,070 - 11,960,713 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542011,957,070 - 11,960,713 (-)NCBIChiLan1.0ChiLan1.0
RPL35A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22195,881,882 - 195,887,544 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13195,889,693 - 195,895,384 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03195,386,399 - 195,392,113 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13205,258,700 - 205,264,485 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3205,258,700 - 205,264,485 (+)Ensemblpanpan1.1panPan2
RPL35A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13328,741,796 - 28,745,043 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3328,741,819 - 28,744,672 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3328,763,087 - 28,766,319 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03328,974,506 - 28,977,760 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3328,974,529 - 28,977,386 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13328,769,937 - 28,773,171 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03328,815,934 - 28,819,178 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03329,437,424 - 29,440,655 (-)NCBIUU_Cfam_GSD_1.0
Rpl35a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602125,713,279 - 125,717,428 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936784167,775 - 171,854 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936784167,623 - 171,962 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL35A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13134,588,392 - 134,591,868 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113134,588,288 - 134,591,873 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213144,182,853 - 144,186,476 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL35A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11591,666,800 - 91,672,138 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1591,666,236 - 91,674,881 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604165,616,903 - 65,622,404 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000020924   ⟹   ENSHGLP00000020721
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473060,872,188 - 60,879,204 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000020925   ⟹   ENSHGLP00000020722
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473060,875,827 - 60,878,552 (-)Ensembl
RefSeq Acc Id: XM_004834664   ⟹   XP_004834721
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,875,693 - 60,879,268 (-)NCBI
RefSeq Acc Id: XM_004834665   ⟹   XP_004834722
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,875,698 - 60,879,439 (-)NCBI
RefSeq Acc Id: XM_013067506   ⟹   XP_012922960
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,875,693 - 60,879,226 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004834721 (Get FASTA)   NCBI Sequence Viewer  
  XP_004834722 (Get FASTA)   NCBI Sequence Viewer  
  XP_012922960 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020721
  ENSHGLP00000032040
  ENSHGLP00100023884
GenBank Protein JAN96855 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004834721   ⟸   XM_004834664
- UniProtKB: A0A0P6J939 (UniProtKB/TrEMBL),   G5ALA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012922960   ⟸   XM_013067506
- UniProtKB: A0A0P6J939 (UniProtKB/TrEMBL),   G5ALA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004834722   ⟸   XM_004834665
- UniProtKB: A0A0P6J939 (UniProtKB/TrEMBL),   G5ALA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000020722   ⟸   ENSHGLT00000020925
RefSeq Acc Id: ENSHGLP00000020721   ⟸   ENSHGLT00000020924


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014823 Ensembl, ENTREZGENE
  ENSHGLG00000046416 UniProtKB/TrEMBL
  ENSHGLG00100017541 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000020924 ENTREZGENE
  ENSHGLT00000047985 UniProtKB/TrEMBL
  ENSHGLT00100024128 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.190 UniProtKB/TrEMBL
InterPro L35A_sf UniProtKB/TrEMBL
  Ribosomal_L35A UniProtKB/TrEMBL
  Ribosomal_L35Ae_CS UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/TrEMBL
KEGG Report hgl:101696530 UniProtKB/TrEMBL
NCBI Gene Rpl35a ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L35A UniProtKB/TrEMBL
  PTHR10902 UniProtKB/TrEMBL
Pfam Ribosomal_L35Ae UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L35AE UniProtKB/TrEMBL
Superfamily-SCOP SSF50447 UniProtKB/TrEMBL
UniProt A0A0P6J939 ENTREZGENE, UniProtKB/TrEMBL
  G5ALA5 ENTREZGENE, UniProtKB/TrEMBL