Atf7ip (activating transcription factor 7 interacting protein) - Rat Genome Database

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Gene: Atf7ip (activating transcription factor 7 interacting protein) Heterocephalus glaber
Analyze
Symbol: Atf7ip
Name: activating transcription factor 7 interacting protein
RGD ID: 18918705
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); transcription coregulator activity (ortholog); transcription corepressor activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of DNA methylation-dependent heterochromatin formation (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Activating transcription factor 7-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475223,470,201 - 23,573,648 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475223,469,237 - 23,605,803 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atf7ip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475223,470,201 - 23,573,648 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475223,469,237 - 23,605,803 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATF7IP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381214,365,682 - 14,502,930 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1214,365,676 - 14,502,931 (+)EnsemblGRCh38hg38GRCh38
GRCh371214,518,616 - 14,655,864 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,409,878 - 14,542,964 (+)NCBINCBI36Build 36hg18NCBI36
Build 341214,409,877 - 14,542,964NCBI
Celera1219,663,702 - 19,796,793 (+)NCBICelera
Cytogenetic Map12p13.1NCBI
HuRef1214,287,849 - 14,420,834 (+)NCBIHuRef
CHM1_11214,483,626 - 14,616,682 (+)NCBICHM1_1
T2T-CHM13v2.01214,243,190 - 14,380,441 (+)NCBIT2T-CHM13v2.0
Atf7ip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396136,495,787 - 136,587,848 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6136,483,165 - 136,587,860 (+)EnsemblGRCm39 Ensembl
GRCm386136,518,789 - 136,610,850 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6136,506,167 - 136,610,862 (+)EnsemblGRCm38mm10GRCm38
MGSCv376136,467,372 - 136,555,900 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366136,483,047 - 136,571,575 (+)NCBIMGSCv36mm8
Celera6139,516,572 - 139,604,675 (+)NCBICelera
Cytogenetic Map6G1NCBI
Atf7ip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,117,122 - 171,202,871 (+)NCBIGRCr8
mRatBN7.24169,385,872 - 169,471,652 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,385,872 - 169,471,650 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4175,681,092 - 175,766,989 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,462,367 - 171,548,111 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,086,734 - 170,172,633 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,476,998 - 170,563,063 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,518,673 - 170,559,532 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04234,735,376 - 234,821,786 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44173,566,920 - 173,586,494 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14173,804,941 - 173,851,537 (+)NCBI
Celera4157,969,742 - 158,055,453 (+)NCBICelera
Cytogenetic Map4q43NCBI
Atf7ip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541311,117,223 - 11,261,606 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541311,117,369 - 11,261,787 (+)NCBIChiLan1.0ChiLan1.0
ATF7IP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21019,837,515 - 19,953,671 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11219,834,441 - 19,950,431 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01214,373,084 - 14,504,286 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11214,789,490 - 14,900,632 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1214,789,794 - 14,900,411 (+)Ensemblpanpan1.1panPan2
ATF7IP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12732,082,615 - 32,194,954 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2732,086,675 - 32,177,364 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2714,254,240 - 14,366,422 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02732,391,192 - 32,503,039 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2732,391,199 - 32,503,070 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12732,280,027 - 32,391,910 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02732,238,657 - 32,345,043 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02713,985,629 - 14,097,829 (+)NCBIUU_Cfam_GSD_1.0
Atf7ip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494593,191,596 - 93,299,107 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365872,919,666 - 3,026,837 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365872,922,855 - 3,026,773 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATF7IP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl558,022,741 - 58,133,399 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1558,022,734 - 58,149,980 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2561,444,254 - 61,571,493 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATF7IP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,264,795 - 14,397,062 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,264,706 - 14,392,206 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606920,914,411 - 21,048,992 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004845837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004845838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021259152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01033214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH169415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000007625   ⟹   ENSHGLP00000007540
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475223,470,201 - 23,573,648 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000007626   ⟹   ENSHGLP00000007541
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475223,510,941 - 23,545,550 (-)Ensembl
RefSeq Acc Id: XM_004845837   ⟹   XP_004845894
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475223,469,237 - 23,573,818 (-)NCBI
RefSeq Acc Id: XM_004845838   ⟹   XP_004845895
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475223,469,237 - 23,573,819 (-)NCBI
RefSeq Acc Id: XM_013072533   ⟹   XP_012927987
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475223,469,237 - 23,573,819 (-)NCBI
RefSeq Acc Id: XM_013072534   ⟹   XP_012927988
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475223,469,237 - 23,573,819 (-)NCBI
RefSeq Acc Id: XM_013072535   ⟹   XP_012927989
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475223,469,237 - 23,605,803 (-)NCBI
RefSeq Acc Id: XM_013072536   ⟹   XP_012927990
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475223,469,237 - 23,545,160 (-)NCBI
RefSeq Acc Id: XM_013072537   ⟹   XP_012927991
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475223,469,237 - 23,537,645 (-)NCBI
RefSeq Acc Id: XM_013072538   ⟹   XP_012927992
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475223,469,237 - 23,565,475 (-)NCBI
RefSeq Acc Id: XM_013072539   ⟹   XP_012927993
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475223,473,123 - 23,573,820 (-)NCBI
RefSeq Acc Id: XM_021259152   ⟹   XP_021114811
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475223,469,237 - 23,593,636 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_012927989   ⟸   XM_013072535
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021114811   ⟸   XM_021259152
- Peptide Label: isoform X5
RefSeq Acc Id: XP_004845895   ⟸   XM_004845838
- Peptide Label: isoform X4
RefSeq Acc Id: XP_012927988   ⟸   XM_013072534
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012927987   ⟸   XM_013072533
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004845894   ⟸   XM_004845837
- Peptide Label: isoform X3
RefSeq Acc Id: XP_012927992   ⟸   XM_013072538
- Peptide Label: isoform X5
RefSeq Acc Id: XP_012927990   ⟸   XM_013072536
- Peptide Label: isoform X5
RefSeq Acc Id: XP_012927991   ⟸   XM_013072537
- Peptide Label: isoform X5
RefSeq Acc Id: XP_012927993   ⟸   XM_013072539
- Peptide Label: isoform X6
RefSeq Acc Id: ENSHGLP00000007540   ⟸   ENSHGLT00000007625
RefSeq Acc Id: ENSHGLP00000007541   ⟸   ENSHGLT00000007626


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005472 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007625 ENTREZGENE
NCBI Gene Atf7ip ENTREZGENE