Slc30a7 (solute carrier family 30 member 7) - Rat Genome Database

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Gene: Slc30a7 (solute carrier family 30 member 7) Heterocephalus glaber
Analyze
Symbol: Slc30a7
Name: solute carrier family 30 member 7
RGD ID: 18918683
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN zinc ion transport (ortholog); ASSOCIATED WITH epilepsy (ortholog); Esophageal Neoplasms (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); Golgi cis cisterna membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc transporter 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248573,757,751 - 3,854,761 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248573,757,359 - 3,856,431 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc30a7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248573,757,751 - 3,854,761 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248573,757,359 - 3,856,431 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC30A7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381100,896,090 - 100,996,078 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1100,896,076 - 100,981,757 (+)EnsemblGRCh38hg38GRCh38
GRCh371101,361,646 - 101,447,313 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361101,134,266 - 101,217,596 (+)NCBINCBI36Build 36hg18NCBI36
Build 341101,073,698 - 101,157,013NCBI
Celera199,623,317 - 99,709,033 (+)NCBICelera
Cytogenetic Map1p21.2NCBI
HuRef199,486,731 - 99,572,449 (+)NCBIHuRef
CHM1_11101,477,771 - 101,563,137 (+)NCBICHM1_1
T2T-CHM13v2.01100,744,936 - 100,844,787 (+)NCBIT2T-CHM13v2.0
Slc30a7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393115,732,622 - 115,801,079 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3115,732,622 - 115,801,055 (-)EnsemblGRCm39 Ensembl
GRCm383115,938,973 - 116,007,414 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3115,938,973 - 116,007,406 (-)EnsemblGRCm38mm10GRCm38
MGSCv373115,641,891 - 115,710,324 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363115,937,949 - 115,999,383 (-)NCBIMGSCv36mm8
Celera3122,363,550 - 122,431,860 (-)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.16NCBI
Slc30a7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82206,544,800 - 206,607,087 (-)NCBIGRCr8
mRatBN7.22203,855,484 - 203,922,155 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2203,859,175 - 203,922,132 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2211,516,928 - 211,578,975 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02209,407,159 - 209,469,557 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02204,224,186 - 204,286,586 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02218,888,431 - 218,951,030 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2218,888,431 - 218,951,030 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02236,974,683 - 237,037,073 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42212,088,266 - 212,162,896 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12212,051,764 - 212,125,500 (-)NCBI
Celera2196,361,269 - 196,423,031 (-)NCBICelera
Cytogenetic Map2q42NCBI
Slc30a7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554355,530,591 - 5,609,613 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554355,530,591 - 5,609,613 (+)NCBIChiLan1.0ChiLan1.0
SLC30A7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,027,731 - 126,133,290 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11125,205,627 - 125,291,318 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01103,552,661 - 103,636,019 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11102,265,976 - 102,351,022 (+)NCBIpanpan1.1PanPan1.1panPan2
SLC30A7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1649,142,520 - 49,232,251 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl649,147,142 - 49,232,241 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha651,813,311 - 51,903,516 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0649,486,715 - 49,577,244 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl649,486,714 - 49,577,163 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1649,179,708 - 49,270,177 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0649,159,270 - 49,249,743 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0649,588,864 - 49,679,623 (-)NCBIUU_Cfam_GSD_1.0
Slc30a7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058111,105,144 - 111,178,451 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936748910,511 - 987,094 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936748910,542 - 985,601 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC30A7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4117,314,845 - 117,396,495 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14117,320,229 - 117,396,383 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24128,858,156 - 128,940,513 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC30A7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12032,355,201 - 32,457,491 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2032,377,130 - 32,457,490 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603825,612,890 - 25,712,201 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000002025   ⟹   ENSHGLP00000001979
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248573,757,751 - 3,854,761 (+)Ensembl
RefSeq Acc Id: XM_004869139   ⟹   XP_004869196
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248573,757,450 - 3,856,431 (+)NCBI
RefSeq Acc Id: XM_021247854   ⟹   XP_021103513
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248573,757,450 - 3,835,851 (+)NCBI
RefSeq Acc Id: XM_021247855   ⟹   XP_021103514
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248573,757,359 - 3,856,431 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004869196 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103513 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103514 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000001979
  ENSHGLP00100028954
GenBank Protein JAN98437 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021103514   ⟸   XM_021247855
- Peptide Label: isoform X3
- UniProtKB: G5AYQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004869196   ⟸   XM_004869139
- Peptide Label: isoform X1
- UniProtKB: A0A0N8ET71 (UniProtKB/TrEMBL),   G5AYQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103513   ⟸   XM_021247854
- Peptide Label: isoform X2
- UniProtKB: G5AYQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000001979   ⟸   ENSHGLT00000002025


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001503 Ensembl, ENTREZGENE
  ENSHGLG00100004218 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000002025 ENTREZGENE
  ENSHGLT00100093299 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1510.10 UniProtKB/TrEMBL
InterPro Cation_efflux UniProtKB/TrEMBL
  Cation_efflux_TMD_sf UniProtKB/TrEMBL
  Msc2-like UniProtKB/TrEMBL
KEGG Report hgl:101696618 UniProtKB/TrEMBL
NCBI Gene Slc30a7 ENTREZGENE
PANTHER PTHR45755 UniProtKB/TrEMBL
  ZINC TRANSPORTER 7 UniProtKB/TrEMBL
Pfam Cation_efflux UniProtKB/TrEMBL
Superfamily-SCOP SSF161111 UniProtKB/TrEMBL
UniProt A0A0N8ET71 ENTREZGENE, UniProtKB/TrEMBL
  G5AYQ6 ENTREZGENE, UniProtKB/TrEMBL