Chst4 (carbohydrate sulfotransferase 4) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Chst4 (carbohydrate sulfotransferase 4) Heterocephalus glaber
Analyze
Symbol: Chst4
Name: carbohydrate sulfotransferase 4
RGD ID: 18918552
Description: ENCODES a protein that exhibits N-acetylglucosamine 6-O-sulfotransferase activity (inferred); sulfotransferase activity (inferred); transferase activity (inferred); INVOLVED IN leukocyte tethering or rolling (ortholog); positive regulation of leukocyte tethering or rolling (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant dyskeratosis congenita 6 (ortholog); genetic disease (ortholog); FOUND IN Golgi membrane (inferred); membrane (inferred); trans-Golgi network (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474613,738,110 - 13,739,261 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474613,728,973 - 13,740,231 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Chst4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474613,738,110 - 13,739,261 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474613,728,973 - 13,740,231 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CHST4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381671,526,120 - 71,538,748 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1671,525,233 - 71,538,748 (+)EnsemblGRCh38hg38GRCh38
GRCh371671,560,023 - 71,572,651 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361670,117,560 - 70,129,917 (+)NCBINCBI36Build 36hg18NCBI36
Build 341670,117,561 - 70,129,917NCBI
Celera1655,875,874 - 55,888,343 (+)NCBICelera
Cytogenetic Map16q22.2NCBI
HuRef1657,328,061 - 57,340,472 (+)NCBIHuRef
CHM1_11672,972,864 - 72,985,312 (+)NCBICHM1_1
T2T-CHM13v2.01677,343,320 - 77,355,947 (+)NCBIT2T-CHM13v2.0
Chst4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398110,755,776 - 110,766,033 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8110,755,785 - 110,766,372 (-)EnsemblGRCm39 Ensembl
GRCm388110,029,075 - 110,039,401 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8110,029,153 - 110,039,740 (-)EnsemblGRCm38mm10GRCm38
MGSCv378112,552,975 - 112,563,234 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368112,918,282 - 112,928,869 (-)NCBIMGSCv36mm8
Celera8114,251,169 - 114,261,515 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map857.38NCBI
Chst4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81954,900,914 - 54,911,735 (-)NCBIGRCr8
mRatBN7.21937,993,471 - 38,002,123 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1937,991,417 - 38,003,608 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1944,805,960 - 44,814,535 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01945,459,296 - 45,467,871 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01947,768,905 - 47,777,480 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01941,630,060 - 41,642,373 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1941,631,715 - 41,640,367 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01952,453,925 - 52,465,993 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41939,900,812 - 39,909,464 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11939,906,652 - 39,907,819 (-)NCBI
Celera1937,396,998 - 37,405,591 (-)NCBICelera
Cytogenetic Map19q12NCBI
Chst4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554844,243,148 - 4,244,293 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554844,234,677 - 4,245,092 (+)NCBIChiLan1.0ChiLan1.0
CHST4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21882,620,979 - 82,634,153 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11688,551,897 - 88,565,071 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01653,472,432 - 53,485,605 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11671,363,206 - 71,375,615 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1671,373,703 - 71,374,863 (+)Ensemblpanpan1.1panPan2
CHST4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1577,322,779 - 77,341,017 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl577,331,342 - 77,340,057 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha577,292,995 - 77,301,710 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0577,761,886 - 77,789,503 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl577,770,434 - 77,779,148 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1577,590,532 - 77,599,275 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0577,413,685 - 77,422,400 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0577,912,392 - 77,921,119 (+)NCBIUU_Cfam_GSD_1.0
Chst4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934937,360,087 - 37,362,145 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647522,227,835 - 22,229,022 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647522,227,702 - 22,229,022 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl614,535,849 - 14,546,972 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1614,532,379 - 14,544,502 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2614,173,077 - 14,181,166 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHST4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1554,650,418 - 54,663,195 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl554,661,280 - 54,662,446 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604717,469,725 - 17,471,726 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000028995   ⟹   ENSHGLP00000028505
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474613,738,110 - 13,739,261 (+)Ensembl
RefSeq Acc Id: XM_004842899   ⟹   XP_004842956
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474613,728,973 - 13,740,231 (+)NCBI
RefSeq Acc Id: XM_021256733   ⟹   XP_021112392
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474613,730,023 - 13,740,231 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004842956 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112392 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB15470 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028505
GenBank Protein JAO02673 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004842956   ⟸   XM_004842899
- Peptide Label: isoform X2
- UniProtKB: G5C1Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112392   ⟸   XM_021256733
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000028505   ⟸   ENSHGLT00000028995


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000020785 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000028995 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro Carbohydrate_sulfotransferase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
KEGG Report hgl:101698578 UniProtKB/TrEMBL
NCBI Gene Chst4 ENTREZGENE
PANTHER CARBOHYDRATE SULFOTRANSFERASE UniProtKB/TrEMBL
  CARBOHYDRATE SULFOTRANSFERASE 4 UniProtKB/TrEMBL
Pfam Sulfotransfer_1 UniProtKB/TrEMBL
PIRSF Carbohydrate_sulfotransferase UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt G5C1Q9 ENTREZGENE, UniProtKB/TrEMBL