Mgat5 (alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase) - Rat Genome Database

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Gene: Mgat5 (alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase) Heterocephalus glaber
Analyze
Symbol: Mgat5
Name: alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase
RGD ID: 18918472
Description: ENCODES a protein that exhibits acetylglucosaminyltransferase activity (inferred); alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity (inferred); glycosyltransferase activity (inferred); INVOLVED IN protein N-linked glycosylation (ortholog); ASSOCIATED WITH Enterovirus Infections (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN extracellular region (inferred); Golgi apparatus (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A; mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473233,605,569 - 33,898,834 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473233,564,740 - 33,896,573 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mgat5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473233,605,569 - 33,898,834 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473233,564,740 - 33,896,573 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MGAT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382134,119,935 - 134,454,621 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2134,119,983 - 134,454,621 (+)EnsemblGRCh38hg38GRCh38
GRCh372134,877,506 - 135,212,192 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362134,728,300 - 134,922,938 (+)NCBINCBI36Build 36hg18NCBI36
Build 342134,842,899 - 135,040,200NCBI
Celera2128,724,443 - 128,919,142 (+)NCBICelera
Cytogenetic Map2q21.2-q21.3NCBI
HuRef2127,004,546 - 127,204,992 (+)NCBIHuRef
CHM1_12135,016,473 - 135,216,821 (+)NCBICHM1_1
T2T-CHM13v2.02134,559,395 - 134,894,193 (+)NCBIT2T-CHM13v2.0
Mgat5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391127,132,450 - 127,413,760 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1127,132,752 - 127,416,073 (+)EnsemblGRCm39 Ensembl
GRCm381127,204,919 - 127,488,334 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1127,205,015 - 127,488,336 (+)EnsemblGRCm38mm10GRCm38
MGSCv371129,101,563 - 129,379,549 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361129,134,308 - 129,311,253 (+)NCBIMGSCv36mm8
Celera1129,854,899 - 130,132,451 (+)NCBICelera
Cytogenetic Map1E3NCBI
cM Map155.71NCBI
Mgat5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81341,228,327 - 41,516,462 (+)NCBIGRCr8
mRatBN7.21338,675,776 - 38,959,697 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1338,676,119 - 38,959,513 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1341,257,822 - 41,541,653 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01342,545,922 - 42,829,754 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01339,811,828 - 40,095,552 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01343,850,744 - 44,157,860 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1343,850,751 - 44,157,924 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01349,012,580 - 49,250,496 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41339,900,089 - 40,135,002 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11340,113,779 - 40,149,045 (+)NCBI
Celera1339,217,802 - 39,336,884 (+)NCBICelera
Cytogenetic Map13q12-q13NCBI
Mgat5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554401,786,874 - 1,999,281 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554401,705,018 - 2,004,838 (+)NCBIChiLan1.0ChiLan1.0
MGAT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21340,463,767 - 40,793,973 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B40,478,737 - 40,808,944 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B25,394,435 - 25,724,420 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B138,284,310 - 138,544,621 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B138,344,539 - 138,538,857 (+)Ensemblpanpan1.1panPan2
MGAT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11937,041,215 - 37,334,585 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1937,087,247 - 37,329,723 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1937,236,423 - 37,575,022 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01938,440,089 - 38,672,160 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11937,082,752 - 37,422,014 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01937,244,160 - 37,582,910 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01938,472,210 - 38,811,086 (+)NCBIUU_Cfam_GSD_1.0
Mgat5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530383,742,596 - 84,069,959 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646957,674,982 - 57,875,107 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646957,615,755 - 57,875,156 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MGAT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1517,544,806 - 17,918,555 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11517,544,806 - 17,919,273 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21520,023,165 - 20,366,014 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MGAT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11018,357,893 - 18,686,009 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1018,487,693 - 18,685,669 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660613,813,320 - 4,147,620 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000007139   ⟹   ENSHGLP00000007055
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473233,605,569 - 33,896,239 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000007140   ⟹   ENSHGLP00000007056
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473233,605,569 - 33,896,239 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000007141   ⟹   ENSHGLP00000007057
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473233,691,491 - 33,896,239 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000007142   ⟹   ENSHGLP00000007058
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473233,692,275 - 33,898,834 (+)Ensembl
RefSeq Acc Id: XM_004836099   ⟹   XP_004836156
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473233,564,740 - 33,896,573 (+)NCBI
RefSeq Acc Id: XM_004836100   ⟹   XP_004836157
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473233,605,809 - 33,896,573 (+)NCBI
RefSeq Acc Id: XM_004836101   ⟹   XP_004836158
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473233,692,372 - 33,896,573 (+)NCBI
RefSeq Acc Id: XM_021236863   ⟹   XP_021092522
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473233,565,031 - 33,896,573 (+)NCBI
RefSeq Acc Id: XM_021236867   ⟹   XP_021092526
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473233,604,236 - 33,896,573 (+)NCBI
RefSeq Acc Id: XM_021236872   ⟹   XP_021092531
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473233,605,810 - 33,896,573 (+)NCBI
RefSeq Acc Id: XM_021236875   ⟹   XP_021092534
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473233,605,791 - 33,896,573 (+)NCBI
RefSeq Acc Id: XM_021236883   ⟹   XP_021092542
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473233,564,776 - 33,896,573 (+)NCBI
RefSeq Acc Id: XM_021236885   ⟹   XP_021092544
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473233,605,805 - 33,895,982 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004836156   ⟸   XM_004836099
- Peptide Label: isoform X1
- UniProtKB: G5BMI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092542   ⟸   XM_021236883
- Peptide Label: isoform X1
- UniProtKB: G5BMI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092522   ⟸   XM_021236863
- Peptide Label: isoform X1
- UniProtKB: G5BMI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092526   ⟸   XM_021236867
- Peptide Label: isoform X1
- UniProtKB: G5BMI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092534   ⟸   XM_021236875
- Peptide Label: isoform X1
- UniProtKB: G5BMI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092544   ⟸   XM_021236885
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004836157   ⟸   XM_004836100
- Peptide Label: isoform X1
- UniProtKB: G5BMI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092531   ⟸   XM_021236872
- Peptide Label: isoform X1
- UniProtKB: G5BMI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836158   ⟸   XM_004836101
- Peptide Label: isoform X1
- UniProtKB: G5BMI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000007055   ⟸   ENSHGLT00000007139
RefSeq Acc Id: ENSHGLP00000007056   ⟸   ENSHGLT00000007140
RefSeq Acc Id: ENSHGLP00000007058   ⟸   ENSHGLT00000007142
RefSeq Acc Id: ENSHGLP00000007057   ⟸   ENSHGLT00000007141


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005155 Ensembl, ENTREZGENE
  ENSHGLG00100018061 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000007139 ENTREZGENE
  ENSHGLT00000007140 ENTREZGENE
  ENSHGLT00000007141 ENTREZGENE
  ENSHGLT00000007142 ENTREZGENE
  ENSHGLT00100024848 UniProtKB/TrEMBL
InterPro DUF4525 UniProtKB/TrEMBL
  GlyclTrfase_18 UniProtKB/TrEMBL
KEGG Report hgl:101721991 UniProtKB/TrEMBL
NCBI Gene Mgat5 ENTREZGENE
PANTHER ALPHA-1,6-MANNOSYLGLYCOPROTEIN 6-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE A UniProtKB/TrEMBL
  ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/TrEMBL
Pfam DUF4525 UniProtKB/TrEMBL
  Glyco_transf_18 UniProtKB/TrEMBL
UniProt G5BMI9 ENTREZGENE, UniProtKB/TrEMBL