C5ar1 (complement C5a receptor 1) - Rat Genome Database

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Gene: C5ar1 (complement C5a receptor 1) Heterocephalus glaber
Analyze
Symbol: C5ar1
Name: complement C5a receptor 1
RGD ID: 18918300
Description: ENCODES a protein that exhibits complement component C5a binding (ortholog); complement component C5a receptor activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); cell proliferation in hindbrain (ortholog); defense response to Gram-positive bacterium (ortholog); ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); adult respiratory distress syndrome (ortholog); Alzheimer's disease (ortholog); FOUND IN cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C5a anaphylatoxin chemotactic receptor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248326,414,587 - 6,423,394 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248326,413,169 - 6,423,394 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
C5ar1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248326,414,587 - 6,423,394 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248326,413,169 - 6,423,394 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
C5AR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381947,307,477 - 47,322,066 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1947,290,023 - 47,322,066 (+)EnsemblGRCh38hg38GRCh38
GRCh371947,813,118 - 47,825,323 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361952,504,944 - 52,517,167 (+)NCBINCBI36Build 36hg18NCBI36
Build 341952,504,970 - 52,517,172NCBI
Celera1944,616,992 - 44,629,218 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1944,237,376 - 44,249,615 (+)NCBIHuRef
CHM1_11947,815,295 - 47,827,515 (+)NCBICHM1_1
T2T-CHM13v2.01950,129,142 - 50,147,539 (+)NCBIT2T-CHM13v2.0
C5ar1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39715,980,668 - 15,993,465 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl715,980,668 - 15,993,465 (-)EnsemblGRCm39 Ensembl
GRCm38716,246,743 - 16,259,540 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,246,743 - 16,259,540 (-)EnsemblGRCm38mm10GRCm38
MGSCv37716,832,092 - 16,844,889 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36715,405,265 - 15,417,773 (-)NCBIMGSCv36mm8
Celera713,440,651 - 13,453,692 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map78.77NCBI
C5ar1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,077,309 - 86,088,001 (-)NCBIGRCr8
mRatBN7.2176,948,622 - 76,959,826 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx182,324,234 - 82,334,714 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0190,888,270 - 90,898,748 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,079,341 - 84,089,811 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,186,777 - 78,195,132 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,186,776 - 78,195,328 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,452,051 - 79,458,856 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera171,439,044 - 71,449,243 (-)NCBICelera
Cytogenetic Map1q21NCBI
C5ar1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555741,221,187 - 1,231,655 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555741,221,942 - 1,229,634 (+)NCBIChiLan1.0ChiLan1.0
C5AR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22053,452,406 - 53,469,468 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11955,322,450 - 55,339,475 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01944,293,612 - 44,310,430 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11952,950,317 - 52,966,146 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,950,317 - 52,966,146 (+)Ensemblpanpan1.1panPan2
C5AR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,659,637 - 108,704,217 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1108,659,637 - 108,675,401 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1108,141,196 - 108,156,800 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01109,185,920 - 109,201,726 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1109,185,920 - 109,228,780 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11108,852,877 - 108,868,613 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,497,215 - 108,512,964 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01109,365,784 - 109,381,523 (-)NCBIUU_Cfam_GSD_1.0
C5ar1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934919,408,006 - 19,415,325 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366641,032,304 - 1,033,374 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366641,026,216 - 1,033,438 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C5AR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,097,142 - 53,111,565 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,097,162 - 53,111,563 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2648,523,114 - 48,537,524 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C5AR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,633,540 - 40,651,839 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl640,633,448 - 40,652,845 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607320,348,637 - 20,386,343 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000007731   ⟹   ENSHGLP00000007645
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248326,414,587 - 6,423,394 (-)Ensembl
RefSeq Acc Id: XM_004867064   ⟹   XP_004867121
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248326,413,169 - 6,423,394 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004867121 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00870 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007645
Reference Protein Sequences
RefSeq Acc Id: XP_004867121   ⟸   XM_004867064
- UniProtKB: G5AV09 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000007645   ⟸   ENSHGLT00000007731


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005545 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007731 ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro Anphylx_rcpt UniProtKB/TrEMBL
  Formyl_rcpt-rel UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
KEGG Report hgl:101713576 UniProtKB/TrEMBL
NCBI Gene C5ar1 ENTREZGENE
PANTHER C5A ANAPHYLATOXIN CHEMOTACTIC RECEPTOR 1 UniProtKB/TrEMBL
  PTHR24225 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS ANPHYLATOXNR UniProtKB/TrEMBL
  C5ANPHYLTXNR UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt G5AV09 ENTREZGENE, UniProtKB/TrEMBL