Nptx2 (neuronal pentraxin 2) - Rat Genome Database

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Gene: Nptx2 (neuronal pentraxin 2) Heterocephalus glaber
Analyze
Symbol: Nptx2
Name: neuronal pentraxin 2
RGD ID: 18918127
Description: INVOLVED IN associative learning (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); withdrawal disorder (ortholog); FOUND IN extrinsic component of postsynaptic specialization membrane (ortholog); glutamatergic synapse (ortholog); synaptic cleft (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuronal pentraxin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474032,125,715 - 32,136,659 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474032,125,693 - 32,136,671 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Nptx2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474032,125,715 - 32,136,659 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474032,125,693 - 32,136,671 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NPTX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38798,617,285 - 98,629,869 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl798,617,285 - 98,629,869 (+)EnsemblGRCh38hg38GRCh38
GRCh37798,246,597 - 98,259,181 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36798,084,545 - 98,097,116 (+)NCBINCBI36Build 36hg18NCBI36
Build 34797,891,259 - 97,903,831NCBI
Celera792,941,625 - 92,954,210 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef792,845,666 - 92,858,931 (+)NCBIHuRef
CHM1_1798,176,644 - 98,189,227 (+)NCBICHM1_1
T2T-CHM13v2.0799,848,957 - 99,861,534 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2797,570,995 - 97,583,579 (+)NCBI
Nptx2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395144,482,697 - 144,494,288 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5144,482,712 - 144,494,288 (+)EnsemblGRCm39 Ensembl
GRCm385144,545,887 - 144,557,478 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5144,545,902 - 144,557,478 (+)EnsemblGRCm38mm10GRCm38
MGSCv375145,306,756 - 145,318,347 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365144,799,430 - 144,811,005 (+)NCBIMGSCv36mm8
Celera5141,541,852 - 141,556,622 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map584.58NCBI
Nptx2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,151,136 - 15,162,045 (-)NCBIGRCr8
mRatBN7.21210,037,435 - 10,048,345 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1210,037,435 - 10,048,345 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,838,309 - 10,849,215 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01211,461,552 - 11,472,458 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,485,258 - 10,496,168 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01212,014,638 - 12,025,547 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,013,911 - 12,025,549 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01214,073,308 - 14,084,217 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,359,406 - 10,370,315 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11210,389,235 - 10,559,203 (-)NCBI
Celera1211,838,383 - 11,849,292 (-)NCBICelera
Cytogenetic Map12p11NCBI
Nptx2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546014,437,755 - 14,448,964 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546014,437,755 - 14,448,932 (+)NCBIChiLan1.0ChiLan1.0
NPTX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26116,467,229 - 116,480,719 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17164,731,864 - 164,745,354 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0790,581,250 - 90,593,880 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
NPTX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1610,805,564 - 10,816,587 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl610,806,696 - 10,816,572 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha612,432,206 - 12,443,215 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0610,806,047 - 10,817,053 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl610,806,056 - 10,817,052 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1610,675,231 - 10,686,229 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0610,654,414 - 10,665,423 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0610,888,515 - 10,899,524 (-)NCBIUU_Cfam_GSD_1.0
Nptx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344138,863,793 - 138,874,869 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367501,064,256 - 1,081,498 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367501,070,386 - 1,081,467 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPTX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl35,720,680 - 5,732,454 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.135,720,686 - 5,732,458 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.235,732,030 - 5,741,753 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NPTX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12814,537,837 - 14,550,504 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2814,537,787 - 14,550,266 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660701,630,433 - 1,643,102 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004840482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01018694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSHGLT00000010901   ⟹   ENSHGLP00000010779
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474032,125,715 - 32,136,659 (+)Ensembl
RefSeq Acc Id: XM_004840482   ⟹   XP_004840539
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474032,125,693 - 32,136,671 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004840539 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010779
RefSeq Acc Id: XP_004840539   ⟸   XM_004840482
- UniProtKB: G5AX82 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000010779   ⟸   ENSHGLT00000010901


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007737 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010901 ENTREZGENE
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  Pentaxin_CS UniProtKB/TrEMBL
  Pentraxin-related UniProtKB/TrEMBL
NCBI Gene Nptx2 ENTREZGENE
PANTHER NEURONAL PENTRAXIN-2 UniProtKB/TrEMBL
  PENTRAXIN UniProtKB/TrEMBL
Pfam Pentaxin UniProtKB/TrEMBL
PRINTS PENTAXIN UniProtKB/TrEMBL
PROSITE PTX_1 UniProtKB/TrEMBL
  PTX_2 UniProtKB/TrEMBL
SMART PTX UniProtKB/TrEMBL
Superfamily-SCOP Concanavalin A-like lectins/glucanases UniProtKB/TrEMBL
UniProt G5AX82 ENTREZGENE, UniProtKB/TrEMBL