Sfrp5 (secreted frizzled related protein 5) - Rat Genome Database

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Pathways
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Gene: Sfrp5 (secreted frizzled related protein 5) Heterocephalus glaber
Analyze
Symbol: Sfrp5
Name: secreted frizzled related protein 5
RGD ID: 18917917
Description: INVOLVED IN convergent extension involved in axis elongation (ortholog); digestive tract morphogenesis (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: secreted frizzled-related protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247379,395,393 - 9,401,173 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247379,395,589 - 9,401,600 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Sfrp5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247379,395,393 - 9,401,173 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247379,395,589 - 9,401,600 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SFRP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381097,766,751 - 97,771,999 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1097,766,751 - 97,771,999 (-)EnsemblGRCh38hg38GRCh38
GRCh371099,526,508 - 99,531,756 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361099,516,508 - 99,521,760 (-)NCBINCBI36Build 36hg18NCBI36
Build 341099,516,507 - 99,521,760NCBI
Celera1093,263,776 - 93,269,024 (-)NCBICelera
Cytogenetic Map10q24.2NCBI
HuRef1093,151,760 - 93,156,804 (-)NCBIHuRef
CHM1_11099,808,183 - 99,813,431 (-)NCBICHM1_1
T2T-CHM13v2.01098,646,905 - 98,652,154 (-)NCBIT2T-CHM13v2.0
Sfrp5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391942,186,410 - 42,190,691 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1942,186,410 - 42,190,691 (-)EnsemblGRCm39 Ensembl
GRCm381942,197,971 - 42,202,252 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1942,197,971 - 42,202,252 (-)EnsemblGRCm38mm10GRCm38
MGSCv371942,272,461 - 42,276,742 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361942,251,282 - 42,255,442 (-)NCBIMGSCv36mm8
Celera1942,995,885 - 43,000,204 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1935.93NCBI
Sfrp5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81250,956,050 - 250,960,512 (-)NCBIGRCr8
mRatBN7.21241,006,762 - 241,011,224 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1241,006,762 - 241,011,224 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1249,152,177 - 249,156,639 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01255,849,336 - 255,853,798 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01248,502,351 - 248,506,813 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01261,442,108 - 261,446,570 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1261,442,108 - 261,446,570 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01268,894,580 - 268,899,042 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41248,652,323 - 248,656,785 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11248,912,232 - 248,915,892 (+)NCBI
Celera1236,841,071 - 236,845,533 (-)NCBICelera
Cytogenetic Map1q54NCBI
Sfrp5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555073,836,607 - 3,841,910 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555073,836,607 - 3,841,910 (-)NCBIChiLan1.0ChiLan1.0
SFRP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28109,674,878 - 109,680,118 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110109,680,197 - 109,685,437 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01094,383,269 - 94,389,053 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11097,877,790 - 97,882,846 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1097,877,790 - 97,882,850 (-)Ensemblpanpan1.1panPan2
SFRP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12810,994,180 - 10,999,552 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2810,993,930 - 10,999,564 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2811,175,774 - 11,184,770 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02811,316,262 - 11,324,930 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2811,319,379 - 11,324,930 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12811,001,807 - 11,009,926 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02811,040,415 - 11,048,876 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02811,178,206 - 11,186,797 (-)NCBIUU_Cfam_GSD_1.0
Sfrp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721335,929,225 - 35,934,796 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366361,968,330 - 1,973,916 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366361,968,410 - 1,973,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SFRP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14109,119,822 - 109,125,686 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114109,120,382 - 109,125,655 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214118,624,514 - 118,629,817 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SFRP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1990,931,819 - 90,938,156 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604851,831,661 - 51,837,261 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004838614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01014371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000014406   ⟹   ENSHGLP00000014262
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247379,395,393 - 9,401,173 (-)Ensembl
RefSeq Acc Id: XM_004838614   ⟹   XP_004838671
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247379,395,589 - 9,401,600 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004838671 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014262
Reference Protein Sequences
RefSeq Acc Id: XP_004838671   ⟸   XM_004838614
RefSeq Acc Id: ENSHGLP00000014262   ⟸   ENSHGLT00000014406


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010192 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000014406 ENTREZGENE
NCBI Gene Sfrp5 ENTREZGENE