Tecpr2 (tectonin beta-propeller repeat containing 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tecpr2 (tectonin beta-propeller repeat containing 2) Heterocephalus glaber
Analyze
Symbol: Tecpr2
Name: tectonin beta-propeller repeat containing 2
RGD ID: 18917913
Description: INVOLVED IN protein exit from endoplasmic reticulum (inferred); ASSOCIATED WITH autistic disorder (ortholog); Charcot-Marie-Tooth disease axonal type 2O (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tectonin beta-propeller repeat-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247342,018,362 - 2,083,122 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247342,015,255 - 2,091,692 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tecpr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247342,018,362 - 2,083,122 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247342,015,255 - 2,091,692 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TECPR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814102,362,941 - 102,502,477 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14102,362,941 - 102,502,477 (+)EnsemblGRCh38hg38GRCh38
GRCh3714102,829,278 - 102,968,814 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614101,899,131 - 102,038,570 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414101,899,130 - 102,038,570NCBI
Celera1482,883,809 - 83,023,050 (+)NCBICelera
Cytogenetic Map14q32.31NCBI
HuRef1483,006,301 - 83,145,714 (+)NCBIHuRef
CHM1_114102,767,161 - 102,906,640 (+)NCBICHM1_1
T2T-CHM13v2.01496,598,536 - 96,738,379 (+)NCBIT2T-CHM13v2.0
Tecpr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912110,855,681 - 110,938,828 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12110,855,698 - 110,938,828 (+)EnsemblGRCm39 Ensembl
GRCm3812110,889,243 - 110,972,394 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12110,889,264 - 110,972,394 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712112,127,474 - 112,210,604 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612111,337,071 - 111,420,201 (+)NCBIMGSCv36mm8
Celera12112,082,700 - 112,167,534 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.86NCBI
Tecpr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86135,720,765 - 135,823,187 (+)NCBIGRCr8
mRatBN7.26129,899,541 - 130,001,975 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6129,899,636 - 130,001,974 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.06135,304,536 - 135,405,865 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,313,008 - 135,402,814 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06145,006,755 - 145,109,606 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46135,619,756 - 135,709,731 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16135,626,017 - 135,715,922 (+)NCBI
Celera6127,467,480 - 127,569,800 (+)NCBICelera
Cytogenetic Map6q32NCBI
Tecpr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555381,661,680 - 1,732,031 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555381,658,177 - 1,733,334 (+)NCBIChiLan1.0ChiLan1.0
TECPR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215103,516,782 - 103,653,347 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114102,733,293 - 102,869,579 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01482,984,313 - 83,120,853 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114102,801,962 - 102,932,587 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14102,814,542 - 102,932,587 (+)Ensemblpanpan1.1panPan2
TECPR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1870,332,934 - 70,435,558 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl870,344,063 - 70,434,218 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha869,846,380 - 69,947,902 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0870,610,039 - 70,711,934 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl870,610,128 - 70,715,062 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1870,274,943 - 70,376,412 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0870,339,560 - 70,442,112 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0870,740,472 - 70,840,832 (+)NCBIUU_Cfam_GSD_1.0
Tecpr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,591,225 - 3,670,706 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936835524,802 - 607,365 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936835525,198 - 604,685 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TECPR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27129,278,047 - 129,319,933 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TECPR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12480,288,323 - 80,426,433 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2480,302,754 - 80,425,788 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605367,485,348 - 67,625,316 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000011660   ⟹   ENSHGLP00000011533
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247342,018,362 - 2,083,122 (-)Ensembl
RefSeq Acc Id: XM_004836916   ⟹   XP_004836973
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247342,015,255 - 2,091,270 (-)NCBI
RefSeq Acc Id: XM_004836917   ⟹   XP_004836974
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247342,015,255 - 2,090,961 (-)NCBI
RefSeq Acc Id: XM_004836918   ⟹   XP_004836975
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247342,015,255 - 2,091,175 (-)NCBI
RefSeq Acc Id: XM_004836919   ⟹   XP_004836976
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247342,015,255 - 2,088,740 (-)NCBI
RefSeq Acc Id: XM_004836921   ⟹   XP_004836978
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247342,015,255 - 2,069,307 (-)NCBI
RefSeq Acc Id: XM_013066423   ⟹   XP_012921877
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247342,015,255 - 2,091,270 (-)NCBI
RefSeq Acc Id: XM_021243981   ⟹   XP_021099640
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247342,015,255 - 2,088,975 (-)NCBI
RefSeq Acc Id: XM_021243983   ⟹   XP_021099642
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247342,015,255 - 2,091,692 (-)NCBI
RefSeq Acc Id: XP_021099642   ⟸   XM_021243983
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J2H0 (UniProtKB/TrEMBL),   A0AAX6RWB9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012921877   ⟸   XM_013066423
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J2H0 (UniProtKB/TrEMBL),   A0AAX6QMX4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836973   ⟸   XM_004836916
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J2H0 (UniProtKB/TrEMBL),   A0AAX6RWB9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836975   ⟸   XM_004836918
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J2H0 (UniProtKB/TrEMBL),   A0AAX6RWB9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836974   ⟸   XM_004836917
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J2H0 (UniProtKB/TrEMBL),   A0AAX6RWB9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099640   ⟸   XM_021243981
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J2H0 (UniProtKB/TrEMBL),   A0AAX6RWB9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836976   ⟸   XM_004836919
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J2H0 (UniProtKB/TrEMBL),   A0AAX6RWB9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836978   ⟸   XM_004836921
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J2H0 (UniProtKB/TrEMBL),   A0AAX6NU39 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000011533   ⟸   ENSHGLT00000011660


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008270 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011660 ENTREZGENE
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Beta-propeller_rpt_TECPR UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Tecpr2 ENTREZGENE
PANTHER PTHR23287:SF16 UniProtKB/TrEMBL
  RUBY-EYE2-LIKE PROTEIN UniProtKB/TrEMBL
Pfam Hyd_WA UniProtKB/TrEMBL
  Tectonin UniProtKB/TrEMBL
SMART TECPR UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A0P6J2H0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6NU39 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QMX4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RWB9 ENTREZGENE, UniProtKB/TrEMBL