S100a1 (S100 calcium binding protein A1) - Rat Genome Database

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Gene: S100a1 (S100 calcium binding protein A1) Heterocephalus glaber
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Symbol: S100a1
Name: S100 calcium binding protein A1
RGD ID: 18917848
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of nitric-oxide synthase activity (ortholog); positive regulation of voltage-gated calcium channel activity (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN A band (ortholog); I band (ortholog); M band (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein S100-A1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,512,288 - 3,516,850 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,512,288 - 3,516,845 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
S100a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,512,288 - 3,516,850 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,512,288 - 3,516,845 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
S100A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,628,434 - 153,632,039 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,627,926 - 153,632,039 (+)EnsemblGRCh38hg38GRCh38
GRCh371153,600,910 - 153,604,515 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,867,497 - 151,871,137 (+)NCBINCBI36Build 36hg18NCBI36
Build 341150,413,945 - 150,417,586NCBI
Celera1126,671,908 - 126,675,547 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,964,378 - 124,968,018 (+)NCBIHuRef
CHM1_11154,996,850 - 155,000,490 (+)NCBICHM1_1
T2T-CHM13v2.01152,765,698 - 152,769,303 (+)NCBIT2T-CHM13v2.0
S100a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,418,341 - 90,421,637 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,418,341 - 90,421,699 (-)EnsemblGRCm39 Ensembl
GRCm38390,511,034 - 90,514,330 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,511,034 - 90,514,392 (-)EnsemblGRCm38mm10GRCm38
MGSCv37390,314,956 - 90,318,252 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,596,964 - 90,600,318 (-)NCBIMGSCv36mm8
Celera390,548,873 - 90,552,169 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.24NCBI
S100a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,291,503 - 178,296,346 (-)NCBIGRCr8
mRatBN7.22175,993,922 - 175,998,765 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,993,922 - 175,999,544 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,134,036 - 183,138,882 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,156,299 - 181,161,145 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,756,640 - 175,761,484 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,900,505 - 189,905,348 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,900,667 - 189,903,219 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,330,969 - 209,336,331 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,784,818 - 182,787,370 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,734,773 - 182,737,446 (-)NCBI
Celera2169,929,425 - 169,934,268 (-)NCBICelera
Cytogenetic Map2q34NCBI
S100a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545276,868 - 281,015 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955545276,868 - 281,015 (+)NCBIChiLan1.0ChiLan1.0
S100A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,201,116 - 96,204,797 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,936,306 - 95,939,987 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,984,296 - 128,987,979 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,612,533 - 132,616,194 (+)NCBIpanpan1.1PanPan1.1panPan2
S100A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,428,819 - 43,432,637 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,428,820 - 43,433,459 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,921,842 - 42,925,633 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,378,532 - 43,382,323 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,378,533 - 43,383,154 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,080,591 - 43,084,382 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,134,307 - 43,138,106 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,417,962 - 43,421,754 (-)NCBIUU_Cfam_GSD_1.0
S100a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,399,294 - 24,403,185 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,427,212 - 3,434,577 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,429,697 - 3,433,567 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl496,007,028 - 96,012,310 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1496,007,026 - 96,012,305 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,900,208 - 104,900,536 (-)NCBISscrofa10.2Sscrofa10.2susScr3
S100A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,172,916 - 10,176,905 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660389,550,156 - 9,554,176 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000009628   ⟹   ENSHGLP00000009521
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248853,512,288 - 3,516,850 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000009629   ⟹   ENSHGLP00000009522
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248853,512,544 - 3,514,931 (-)Ensembl
RefSeq Acc Id: XM_004871434   ⟹   XP_004871491
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248853,512,288 - 3,516,843 (-)NCBI
RefSeq Acc Id: XM_004871435   ⟹   XP_004871492
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248853,512,288 - 3,516,845 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004871491 (Get FASTA)   NCBI Sequence Viewer  
  XP_004871492 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009521
  ENSHGLP00000045977
GenBank Protein JAN96259 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004871492   ⟸   XM_004871435
- UniProtKB: A0A0P6J234 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004871491   ⟸   XM_004871434
- UniProtKB: A0A0P6J234 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000009522   ⟸   ENSHGLT00000009629
Ensembl Acc Id: ENSHGLP00000009521   ⟸   ENSHGLT00000009628


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006829 Ensembl, ENTREZGENE
  ENSHGLG00000044434 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000009628 ENTREZGENE
  ENSHGLT00000062672 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  S100-A1 UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
KEGG Report hgl:101717882 UniProtKB/TrEMBL
NCBI Gene S100a1 ENTREZGENE
PANTHER PROTEIN S100-A1-RELATED UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/TrEMBL
Pfam EF-hand_1 UniProtKB/TrEMBL
  S_100 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  S100_CABP UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
  S_100 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A0P6J234 ENTREZGENE, UniProtKB/TrEMBL