Pphln1 (periphilin 1) - Rat Genome Database

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Gene: Pphln1 (periphilin 1) Heterocephalus glaber
Analyze
Symbol: Pphln1
Name: periphilin 1
RGD ID: 18917277
Description: INVOLVED IN positive regulation of DNA methylation-dependent heterochromatin formation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: periphilin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462481610,190,505 - 10,229,846 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Pphln1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462481610,190,505 - 10,229,846 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PPHLN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381242,326,167 - 42,448,621 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1242,238,447 - 42,459,715 (+)EnsemblGRCh38hg38GRCh38
GRCh371242,719,969 - 42,842,423 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361241,006,214 - 41,128,689 (+)NCBINCBI36Build 36hg18NCBI36
Build 341241,006,213 - 41,122,031NCBI
Celera1241,521,768 - 41,644,263 (+)NCBICelera
Cytogenetic Map12q12NCBI
HuRef1239,746,824 - 39,869,220 (+)NCBIHuRef
CHM1_11242,686,556 - 42,809,069 (+)NCBICHM1_1
T2T-CHM13v2.01242,284,102 - 42,406,479 (+)NCBIT2T-CHM13v2.0
Pphln1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391593,296,243 - 93,389,794 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1593,296,231 - 93,389,391 (+)EnsemblGRCm39 Ensembl
GRCm381593,398,345 - 93,491,913 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1593,398,350 - 93,491,510 (+)EnsemblGRCm38mm10GRCm38
MGSCv371593,228,781 - 93,322,344 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361593,226,538 - 93,319,690 (+)NCBIMGSCv36mm8
Celera1595,543,086 - 95,639,831 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1547.55NCBI
Pphln1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87126,418,042 - 126,509,430 (+)NCBIGRCr8
mRatBN7.27124,538,594 - 124,629,985 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7124,538,627 - 124,629,985 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7126,314,196 - 126,404,688 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07128,540,067 - 128,630,559 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07128,461,614 - 128,552,508 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07134,602,109 - 134,693,807 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7134,603,121 - 134,695,864 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07134,269,149 - 134,361,038 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47131,866,854 - 131,958,060 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17131,951,572 - 132,034,500 (+)NCBI
Celera7120,936,842 - 121,027,416 (+)NCBICelera
Cytogenetic Map7q35NCBI
Pphln1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555001,806,658 - 1,892,056 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555001,744,968 - 1,892,056 (+)NCBIChiLan1.0ChiLan1.0
PPHLN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21051,713,628 - 51,834,368 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11251,710,387 - 51,831,128 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01246,271,425 - 46,392,128 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11247,136,806 - 47,256,615 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1247,125,110 - 47,256,615 (-)Ensemblpanpan1.1panPan2
PPHLN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12711,445,893 - 11,590,168 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2711,443,394 - 11,590,107 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2734,713,227 - 34,859,870 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02711,639,299 - 11,786,475 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2711,642,234 - 11,786,849 (-)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl1728,155,583 - 28,157,366 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12711,452,912 - 11,604,788 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02711,481,989 - 11,628,875 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02734,959,063 - 35,106,374 (+)NCBIUU_Cfam_GSD_1.0
Pphln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494572,006,180 - 72,162,973 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365121,057,128 - 1,158,650 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365121,001,733 - 1,158,647 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPHLN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl573,498,730 - 73,697,953 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1573,556,205 - 73,696,403 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2576,314,125 - 76,434,664 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPHLN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11138,563,818 - 38,684,210 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1138,563,866 - 38,684,030 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037207,876,143 - 207,999,250 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021243012   ⟹   XP_021098671
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462481610,190,505 - 10,229,846 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021098671 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein JAN97053 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021098671   ⟸   XM_021243012
- UniProtKB: A0A0N8ESP8 (UniProtKB/TrEMBL),   G5C3M9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
InterPro Pphln1 UniProtKB/TrEMBL
NCBI Gene Pphln1 ENTREZGENE
PANTHER PERIPHILIN-1 UniProtKB/TrEMBL
  PTHR15836 UniProtKB/TrEMBL
Pfam Lge1 UniProtKB/TrEMBL
UniProt A0A0N8ESP8 ENTREZGENE, UniProtKB/TrEMBL
  G5C3M9 ENTREZGENE, UniProtKB/TrEMBL