Eif4e3 (eukaryotic translation initiation factor 4E family member 3) - Rat Genome Database

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Gene: Eif4e3 (eukaryotic translation initiation factor 4E family member 3) Heterocephalus glaber
Analyze
Symbol: Eif4e3
Name: eukaryotic translation initiation factor 4E family member 3
RGD ID: 18917148
Description: ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: eukaryotic translation initiation factor 4E type 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247736,219,199 - 6,267,512 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247736,047,763 - 6,264,641 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Eif4e3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247736,219,199 - 6,267,512 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247736,047,763 - 6,264,641 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
EIF4E3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38371,659,363 - 71,754,773 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl371,675,414 - 71,754,773 (-)EnsemblGRCh38hg38GRCh38
GRCh37371,724,565 - 71,803,924 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36371,814,568 - 71,885,465 (-)NCBINCBI36Build 36hg18NCBI36
Build 34371,814,567 - 71,885,465NCBI
Celera371,659,031 - 71,734,517 (-)NCBICelera
Cytogenetic Map3p13NCBI
HuRef371,730,725 - 71,780,383 (-)NCBIHuRef
CHM1_1371,680,022 - 71,755,333 (-)NCBICHM1_1
T2T-CHM13v2.0371,698,509 - 71,794,043 (-)NCBIT2T-CHM13v2.0
Eif4e3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39699,599,008 - 99,669,834 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl699,602,096 - 99,643,732 (-)EnsemblGRCm39 Ensembl
GRCm38699,621,879 - 99,692,873 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl699,625,135 - 99,666,771 (-)EnsemblGRCm38mm10GRCm38
MGSCv37699,575,131 - 99,616,765 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36699,590,600 - 99,632,234 (-)NCBIMGSCv36mm8
Celera6101,489,380 - 101,530,927 (-)NCBICelera
Cytogenetic Map6D3NCBI
cM Map645.98NCBI
Eif4e3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84133,709,802 - 133,858,398 (-)NCBIGRCr8
mRatBN7.24132,258,502 - 132,301,808 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4132,258,502 - 132,301,808 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4137,675,414 - 137,719,126 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04133,456,200 - 133,499,910 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04132,074,463 - 132,118,181 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04132,068,581 - 132,111,092 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4132,068,598 - 132,111,079 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04196,560,131 - 196,602,330 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44134,470,883 - 134,514,084 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4121,118,126 - 121,161,071 (-)NCBICelera
Cytogenetic Map4q34NCBI
Eif4e3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542116,354,282 - 16,419,304 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542116,354,282 - 16,520,422 (+)NCBIChiLan1.0ChiLan1.0
EIF4E3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2271,641,978 - 71,684,653 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1371,646,766 - 71,689,440 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0371,617,040 - 71,694,523 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1372,975,451 - 73,049,525 (-)NCBIpanpan1.1PanPan1.1panPan2
EIF4E3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12020,299,757 - 20,349,561 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2020,327,676 - 20,438,998 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2020,277,217 - 20,327,043 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02020,334,599 - 20,384,614 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2020,308,954 - 21,026,250 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12020,024,761 - 20,065,042 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02020,373,429 - 20,413,727 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02020,436,369 - 20,486,225 (+)NCBIUU_Cfam_GSD_1.0
Eif4e3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049423,229,927 - 3,286,977 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366033,227,138 - 3,245,939 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366033,228,091 - 3,285,311 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF4E3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1353,083,645 - 53,124,240 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11353,080,200 - 53,152,335 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21358,771,253 - 58,816,633 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EIF4E3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12232,635,144 - 32,708,932 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041134,070,942 - 134,144,820 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027747   ⟹   ENSHGLP00000027504
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247736,219,199 - 6,267,512 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000027748   ⟹   ENSHGLP00000027505
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247736,219,199 - 6,264,604 (-)Ensembl
RefSeq Acc Id: XM_004854199   ⟹   XP_004854256
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247736,217,309 - 6,264,641 (-)NCBI
RefSeq Acc Id: XM_021266039   ⟹   XP_021121698
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247736,047,763 - 6,264,641 (-)NCBI
RefSeq Acc Id: XM_021266040   ⟹   XP_021121699
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247736,126,061 - 6,264,641 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004854256 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121698 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121699 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027505
Reference Protein Sequences
RefSeq Acc Id: XP_021121698   ⟸   XM_021266039
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021121699   ⟸   XM_021266040
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004854256   ⟸   XM_004854199
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000027504   ⟸   ENSHGLT00000027747
RefSeq Acc Id: ENSHGLP00000027505   ⟸   ENSHGLT00000027748


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019560 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027748 ENTREZGENE
NCBI Gene Eif4e3 ENTREZGENE